miRNA display CGI


Results 81 - 100 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 28130 0.67 0.845076
Target:  5'- -uCGAGGCGG--GCGCCCUcgGCGCCc- -3'
miRNA:   3'- ucGCUUUGCUugUGCGGGA--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 28586 0.72 0.561985
Target:  5'- cGCGAGcgccgGCGGGC-CGCCC-GCGCCg- -3'
miRNA:   3'- uCGCUU-----UGCUUGuGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 28879 0.72 0.531754
Target:  5'- uGCGgcGCGGACGcCGCcgCCUGCGCCc- -3'
miRNA:   3'- uCGCuuUGCUUGU-GCG--GGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 29014 0.69 0.71586
Target:  5'- cGCGcgGCGugcCGCGCCUacgaGCGCCUGc -3'
miRNA:   3'- uCGCuuUGCuu-GUGCGGGa---CGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 29066 0.66 0.878793
Target:  5'- uAGCGGA--GAACcUGCCCggccuggugcugugGCGCCUGc -3'
miRNA:   3'- -UCGCUUugCUUGuGCGGGa-------------CGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 29298 0.66 0.883065
Target:  5'- cGGCGAGGC---CugGCCCggcagcGCGCCg- -3'
miRNA:   3'- -UCGCUUUGcuuGugCGGGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 29398 0.67 0.845076
Target:  5'- cGCGAGGCGGccGCGCGCUacgcgGCgGCCg- -3'
miRNA:   3'- uCGCUUUGCU--UGUGCGGga---CG-CGGac -5'
23565 3' -56.1 NC_005261.1 + 29420 0.67 0.828454
Target:  5'- aGGCGggGCuca-GCGCCCUGgCGCa-- -3'
miRNA:   3'- -UCGCuuUGcuugUGCGGGAC-GCGgac -5'
23565 3' -56.1 NC_005261.1 + 29538 0.71 0.634973
Target:  5'- cGCGAAGCucGCGgGCCCggaccugcagcuggcGCGCCUGc -3'
miRNA:   3'- uCGCUUUGcuUGUgCGGGa--------------CGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 29768 0.67 0.845076
Target:  5'- uGCGgcGCGcguACGCGCCCaUG-GCCUa -3'
miRNA:   3'- uCGCuuUGCu--UGUGCGGG-ACgCGGAc -5'
23565 3' -56.1 NC_005261.1 + 29811 0.7 0.664908
Target:  5'- cGGCGgcGCGG--GCGCCC-GCGCCg- -3'
miRNA:   3'- -UCGCuuUGCUugUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 29856 0.67 0.819866
Target:  5'- cGCGGGcGCGGACGCggGCagggaUGCGCCUGc -3'
miRNA:   3'- uCGCUU-UGCUUGUG--CGgg---ACGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 29926 0.74 0.445234
Target:  5'- cGCGAGcugGCGGACGCuGCgCUGCgGCCUGc -3'
miRNA:   3'- uCGCUU---UGCUUGUG-CGgGACG-CGGAC- -5'
23565 3' -56.1 NC_005261.1 + 30142 0.76 0.367164
Target:  5'- cGGUGGAGCGcGCGCGCCUuagcgGCGCCg- -3'
miRNA:   3'- -UCGCUUUGCuUGUGCGGGa----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 30266 0.68 0.755363
Target:  5'- cGGCGcgGCGGcccGCGCGCCC---GCCUGg -3'
miRNA:   3'- -UCGCuuUGCU---UGUGCGGGacgCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 30857 0.67 0.819866
Target:  5'- cGUGGAcGCGGGCGC-CCCgGCGCCc- -3'
miRNA:   3'- uCGCUU-UGCUUGUGcGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 31198 0.75 0.418168
Target:  5'- cGCGgcGCGuGGCGCGCCCUGCuCCUu -3'
miRNA:   3'- uCGCuuUGC-UUGUGCGGGACGcGGAc -5'
23565 3' -56.1 NC_005261.1 + 31273 0.71 0.613272
Target:  5'- cGcCGAGGCgGAGCGCGCCCgggccgaggUGCGCgUGu -3'
miRNA:   3'- uC-GCUUUG-CUUGUGCGGG---------ACGCGgAC- -5'
23565 3' -56.1 NC_005261.1 + 31312 0.69 0.725869
Target:  5'- cGCGGGgcccGCGGGCGCGCUCgccgccagcGCGCCg- -3'
miRNA:   3'- uCGCUU----UGCUUGUGCGGGa--------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 31453 0.67 0.845076
Target:  5'- cGGCGAgGACGA--GCGCCg-GCGgCCUGa -3'
miRNA:   3'- -UCGCU-UUGCUugUGCGGgaCGC-GGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.