miRNA display CGI


Results 101 - 120 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 31857 0.68 0.783859
Target:  5'- cGCGgcGCGucuuCGgGCCCgGCGCCUu -3'
miRNA:   3'- uCGCuuUGCuu--GUgCGGGaCGCGGAc -5'
23565 3' -56.1 NC_005261.1 + 32086 0.66 0.883065
Target:  5'- cGGCGAGGCGGcacCAUGUCCgGCGUUg- -3'
miRNA:   3'- -UCGCUUUGCUu--GUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 32112 0.67 0.83686
Target:  5'- gGGCGAGGCGGcCA-GCCaCcGCGCCg- -3'
miRNA:   3'- -UCGCUUUGCUuGUgCGG-GaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 32321 0.67 0.845076
Target:  5'- gGGCGcgcGCGAGCG-GCCC-GCGCCc- -3'
miRNA:   3'- -UCGCuu-UGCUUGUgCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 32921 0.68 0.774487
Target:  5'- gGGCGGAguGCGAgaccccgcgcucGCGCGCCCgggcucgccgGCGCUg- -3'
miRNA:   3'- -UCGCUU--UGCU------------UGUGCGGGa---------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 33208 0.74 0.445234
Target:  5'- gAGCGGGAgaGGACAcCGCCCUgGCGCCc- -3'
miRNA:   3'- -UCGCUUUg-CUUGU-GCGGGA-CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 33511 0.67 0.853095
Target:  5'- cGCGgcACG-ACGCGCCCUcgGCCg- -3'
miRNA:   3'- uCGCuuUGCuUGUGCGGGAcgCGGac -5'
23565 3' -56.1 NC_005261.1 + 33619 0.67 0.819866
Target:  5'- cGGCGggGCccggGGGCGCGCCCcGCaCCc- -3'
miRNA:   3'- -UCGCuuUG----CUUGUGCGGGaCGcGGac -5'
23565 3' -56.1 NC_005261.1 + 33652 0.68 0.764985
Target:  5'- aGGCGAuGCGcGCGCaGCCCUcaGCGCUn- -3'
miRNA:   3'- -UCGCUuUGCuUGUG-CGGGA--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 33680 0.75 0.400689
Target:  5'- gGGCGAccuGGCGGACGC-CaagCUGCGCCUGg -3'
miRNA:   3'- -UCGCU---UUGCUUGUGcGg--GACGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 33797 0.66 0.860909
Target:  5'- cGGCGAcGCGGGCcCGCUCaagcugugcgGCGCCg- -3'
miRNA:   3'- -UCGCUuUGCUUGuGCGGGa---------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 34038 0.72 0.560969
Target:  5'- cGCGgcGCGcGCGCuGCCCUGCcugcacgccuucuGCCUGg -3'
miRNA:   3'- uCGCuuUGCuUGUG-CGGGACG-------------CGGAC- -5'
23565 3' -56.1 NC_005261.1 + 34140 0.7 0.675188
Target:  5'- cGCGGAGCGccGC-CGCCCUGUccGCCg- -3'
miRNA:   3'- uCGCUUUGCu-UGuGCGGGACG--CGGac -5'
23565 3' -56.1 NC_005261.1 + 34329 0.67 0.823323
Target:  5'- uGGCGgcGCGGguggcccggcuuggcGCGcCGCCCggcgGCGCCg- -3'
miRNA:   3'- -UCGCuuUGCU---------------UGU-GCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 34413 0.68 0.802176
Target:  5'- -cCGGGugGcGCGCgGCCC-GCGCCUGc -3'
miRNA:   3'- ucGCUUugCuUGUG-CGGGaCGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 34713 0.69 0.705778
Target:  5'- cGGCGGAugccGCGGACGCcgccGUCCgcgGCGCCg- -3'
miRNA:   3'- -UCGCUU----UGCUUGUG----CGGGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 34799 0.66 0.860909
Target:  5'- cGCGAGGCGcGCGCGCgCgUG-GCCg- -3'
miRNA:   3'- uCGCUUUGCuUGUGCG-GgACgCGGac -5'
23565 3' -56.1 NC_005261.1 + 34881 0.69 0.705778
Target:  5'- uGGgGGAGCG-GCGCGCggagcuguaCCgGCGCCUGg -3'
miRNA:   3'- -UCgCUUUGCuUGUGCG---------GGaCGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 34935 0.66 0.883065
Target:  5'- cGgGggGCGGccgGCGCGaCCCgggcccgGCGgCCUGg -3'
miRNA:   3'- uCgCuuUGCU---UGUGC-GGGa------CGC-GGAC- -5'
23565 3' -56.1 NC_005261.1 + 35098 0.68 0.802176
Target:  5'- cGCGAGGCGcuggagaacccgGGCGCGCUg-GCGCCg- -3'
miRNA:   3'- uCGCUUUGC------------UUGUGCGGgaCGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.