miRNA display CGI


Results 121 - 140 of 528 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 35267 0.67 0.83686
Target:  5'- cGGCGGAGCccGCgGCGCCCgcgGcCGCCg- -3'
miRNA:   3'- -UCGCUUUGcuUG-UGCGGGa--C-GCGGac -5'
23565 3' -56.1 NC_005261.1 + 35460 0.68 0.793091
Target:  5'- gGGCGAGGCcucGGGCGCGCUC-GCGUCc- -3'
miRNA:   3'- -UCGCUUUG---CUUGUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 35546 0.67 0.852302
Target:  5'- cAGCGAcggccgcGGCGGACGCGgCgCUggGCGCCg- -3'
miRNA:   3'- -UCGCU-------UUGCUUGUGCgG-GA--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 35673 0.76 0.335619
Target:  5'- cGGCGAGGCGGuguC-CGCCggGCGCCUGg -3'
miRNA:   3'- -UCGCUUUGCUu--GuGCGGgaCGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 35750 0.68 0.781995
Target:  5'- uGGCGcgGCG-GCGCGCCgaggagguccgGCGCCUGc -3'
miRNA:   3'- -UCGCuuUGCuUGUGCGGga---------CGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 36101 0.67 0.808443
Target:  5'- cGCGuGGugGGACGCGuucucccuggcggcCCCUGCGCUg- -3'
miRNA:   3'- uCGC-UUugCUUGUGC--------------GGGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 36345 0.7 0.675188
Target:  5'- gAGCGcgcGCGGcuGgGCGCCCUGCGCg-- -3'
miRNA:   3'- -UCGCuu-UGCU--UgUGCGGGACGCGgac -5'
23565 3' -56.1 NC_005261.1 + 36385 0.66 0.860909
Target:  5'- aGGCGGccGGCGGGCGCGCggcggagaucagCC-GCGCgCUGg -3'
miRNA:   3'- -UCGCU--UUGCUUGUGCG------------GGaCGCG-GAC- -5'
23565 3' -56.1 NC_005261.1 + 36500 0.67 0.819866
Target:  5'- gAGCGAGgcccugaucGCGGGCGCGCUg-GCGCagCUGg -3'
miRNA:   3'- -UCGCUU---------UGCUUGUGCGGgaCGCG--GAC- -5'
23565 3' -56.1 NC_005261.1 + 36593 0.66 0.883065
Target:  5'- cGGCcaccgGggGgGGGCAgCGCuCCUGCGCCc- -3'
miRNA:   3'- -UCG-----CuuUgCUUGU-GCG-GGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 36653 0.66 0.868513
Target:  5'- cGCGGAggccACGGcGCGCGCCgaGCGCa-- -3'
miRNA:   3'- uCGCUU----UGCU-UGUGCGGgaCGCGgac -5'
23565 3' -56.1 NC_005261.1 + 36922 0.66 0.860909
Target:  5'- gGGcCGGGACGuACuccgGgGCCCUGCGCUg- -3'
miRNA:   3'- -UC-GCUUUGCuUG----UgCGGGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 36976 0.67 0.845076
Target:  5'- uGCGGAGCGcAUcgACGCgCUGCGCgagCUGa -3'
miRNA:   3'- uCGCUUUGCuUG--UGCGgGACGCG---GAC- -5'
23565 3' -56.1 NC_005261.1 + 37112 0.66 0.8759
Target:  5'- cGCGAGgaccACGAGgGCGCCaagGCGCg-- -3'
miRNA:   3'- uCGCUU----UGCUUgUGCGGga-CGCGgac -5'
23565 3' -56.1 NC_005261.1 + 37146 0.71 0.613272
Target:  5'- gAGUGGcauggcaccAGCGcucGCGCGCgCUUGCGCCUGg -3'
miRNA:   3'- -UCGCU---------UUGCu--UGUGCG-GGACGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 37245 0.75 0.392126
Target:  5'- uGGCGGAGCGcggcGACGCGCUggGCGCCUu -3'
miRNA:   3'- -UCGCUUUGC----UUGUGCGGgaCGCGGAc -5'
23565 3' -56.1 NC_005261.1 + 37419 0.68 0.755363
Target:  5'- cGGCGcAGGCGcACGCGCCCUuccGgGaCCUGc -3'
miRNA:   3'- -UCGC-UUUGCuUGUGCGGGA---CgC-GGAC- -5'
23565 3' -56.1 NC_005261.1 + 37570 0.7 0.669024
Target:  5'- cGCGAAccccGCGAcGCGCGCCgUugcggcgcgggccgcGCGCCUGu -3'
miRNA:   3'- uCGCUU----UGCU-UGUGCGGgA---------------CGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 37688 0.71 0.623602
Target:  5'- cGCGAGGCGGACucggagaucgACGCgCUGgCGCCg- -3'
miRNA:   3'- uCGCUUUGCUUG----------UGCGgGAC-GCGGac -5'
23565 3' -56.1 NC_005261.1 + 37890 0.68 0.774487
Target:  5'- uGCuGAACGAGauCGUgaaCCUGCGCCUGg -3'
miRNA:   3'- uCGcUUUGCUUguGCG---GGACGCGGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.