miRNA display CGI


Results 61 - 80 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 122695 0.66 0.860909
Target:  5'- cGCGucGCGAACgACGCCUUccGCuccuGCCUGc -3'
miRNA:   3'- uCGCuuUGCUUG-UGCGGGA--CG----CGGAC- -5'
23565 3' -56.1 NC_005261.1 + 122484 0.69 0.725869
Target:  5'- cGGCGAGGCGGu--CGgCCUGCGCg-- -3'
miRNA:   3'- -UCGCUUUGCUuguGCgGGACGCGgac -5'
23565 3' -56.1 NC_005261.1 + 122333 0.69 0.725869
Target:  5'- cGCGggGCGGGagauaaaGCGCCCgcGCGUCg- -3'
miRNA:   3'- uCGCuuUGCUUg------UGCGGGa-CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 122174 0.67 0.83686
Target:  5'- cGCGGccACGAugGCGCCCgucacGC-CCUGc -3'
miRNA:   3'- uCGCUu-UGCUugUGCGGGa----CGcGGAC- -5'
23565 3' -56.1 NC_005261.1 + 121908 0.66 0.860909
Target:  5'- uAGCu---CGucuGCGCGCCgUGCGCCg- -3'
miRNA:   3'- -UCGcuuuGCu--UGUGCGGgACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 121666 0.7 0.664908
Target:  5'- -aCGAGcaGAGCAagGUCCUGCGCCUGa -3'
miRNA:   3'- ucGCUUugCUUGUg-CGGGACGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 121619 0.67 0.853095
Target:  5'- cGCGGAgcGCGggUAUaCCUucgGCGCCUGc -3'
miRNA:   3'- uCGCUU--UGCuuGUGcGGGa--CGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 120654 0.66 0.888634
Target:  5'- cGGCGcAAggcGCGGGCGCGCCUgugaucucgcgcGCGCCc- -3'
miRNA:   3'- -UCGC-UU---UGCUUGUGCGGGa-----------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 120620 0.72 0.571149
Target:  5'- cGUGggGCuccugcuGGugGCgGCCCUGUGCCUGc -3'
miRNA:   3'- uCGCuuUG-------CUugUG-CGGGACGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 120370 0.67 0.828454
Target:  5'- uGCGcGACGGcgcCGCGCCCUcGCGCa-- -3'
miRNA:   3'- uCGCuUUGCUu--GUGCGGGA-CGCGgac -5'
23565 3' -56.1 NC_005261.1 + 120324 0.7 0.674162
Target:  5'- uGCGAGGCgcgcugcguccccGAGCGCGucuCCCUGCGCUg- -3'
miRNA:   3'- uCGCUUUG-------------CUUGUGC---GGGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 119881 0.7 0.664908
Target:  5'- uAGCGGGACGucGCuCGUgCUGCGCCc- -3'
miRNA:   3'- -UCGCUUUGCu-UGuGCGgGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 119631 0.68 0.764985
Target:  5'- cGCGcGACGGACAccuCGCacggCUGCGcCCUGg -3'
miRNA:   3'- uCGCuUUGCUUGU---GCGg---GACGC-GGAC- -5'
23565 3' -56.1 NC_005261.1 + 119466 0.67 0.853095
Target:  5'- cAGCacGACGGACgagACGCCCUuggggacgccgGCGCCg- -3'
miRNA:   3'- -UCGcuUUGCUUG---UGCGGGA-----------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 119043 0.66 0.883065
Target:  5'- gGGCGAAgGCGAcUGCGCCCgGCaGCUg- -3'
miRNA:   3'- -UCGCUU-UGCUuGUGCGGGaCG-CGGac -5'
23565 3' -56.1 NC_005261.1 + 119031 0.68 0.774487
Target:  5'- gAGCGGAcgucgccgACGGuaACGCGCCCgcggccGCGCgUGu -3'
miRNA:   3'- -UCGCUU--------UGCU--UGUGCGGGa-----CGCGgAC- -5'
23565 3' -56.1 NC_005261.1 + 118884 0.71 0.613272
Target:  5'- cGGCcaccGCGGGCGCGCugguggCCUGCGUCUGg -3'
miRNA:   3'- -UCGcuu-UGCUUGUGCG------GGACGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 118852 0.71 0.592662
Target:  5'- cGCGGAggGCG-GCGCGCCCgcgGC-CCUGg -3'
miRNA:   3'- uCGCUU--UGCuUGUGCGGGa--CGcGGAC- -5'
23565 3' -56.1 NC_005261.1 + 118171 0.7 0.695632
Target:  5'- cGGCGggGCuugccgucugGGccGCGgGCCCcGCGCCUGc -3'
miRNA:   3'- -UCGCuuUG----------CU--UGUgCGGGaCGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 118107 0.69 0.735795
Target:  5'- cGCGGAGCcgcuGCGgGCCCgcGCGCCUu -3'
miRNA:   3'- uCGCUUUGcu--UGUgCGGGa-CGCGGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.