miRNA display CGI


Results 81 - 100 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 117478 0.66 0.873707
Target:  5'- cGGCGAcGCGcuGCugcgcuucuaccuuGCGCCCgccgGCGCCg- -3'
miRNA:   3'- -UCGCUuUGCu-UG--------------UGCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 117460 0.66 0.890003
Target:  5'- cGCGaAGACGGGCGCGUacaagUCggcgGCGCCa- -3'
miRNA:   3'- uCGC-UUUGCUUGUGCG-----GGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 117187 0.71 0.60708
Target:  5'- cGGCGggGCGGugacguucuccuaccGgCGCGCCC-GCuGCCUGg -3'
miRNA:   3'- -UCGCuuUGCU---------------U-GUGCGGGaCG-CGGAC- -5'
23565 3' -56.1 NC_005261.1 + 117039 0.67 0.845076
Target:  5'- cAGCGuccGCGGcCGCGCUC-GCGCCa- -3'
miRNA:   3'- -UCGCuu-UGCUuGUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 116642 0.72 0.57217
Target:  5'- gGGCGAGGCccGCGCGCCC-GcCGCCg- -3'
miRNA:   3'- -UCGCUUUGcuUGUGCGGGaC-GCGGac -5'
23565 3' -56.1 NC_005261.1 + 116521 0.66 0.868513
Target:  5'- cGGCGgcGCGAGgcccgccgcucCGCGCCCgcgcGCGUCa- -3'
miRNA:   3'- -UCGCuuUGCUU-----------GUGCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 116485 0.71 0.621535
Target:  5'- gGGCGggGCGGGCGCGCgguauaaagaGCGCCg- -3'
miRNA:   3'- -UCGCuuUGCUUGUGCGgga-------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 116395 0.77 0.313288
Target:  5'- uGCGggGCGAGCcCGCCCgcacgcGCGCCc- -3'
miRNA:   3'- uCGCuuUGCUUGuGCGGGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 115994 0.71 0.623602
Target:  5'- cGCu-GACGAGC-CGCCCgagGCGgCCUGa -3'
miRNA:   3'- uCGcuUUGCUUGuGCGGGa--CGC-GGAC- -5'
23565 3' -56.1 NC_005261.1 + 115804 0.66 0.860909
Target:  5'- aAGCGGAugaggcucACGcACACGCggUGCGCCa- -3'
miRNA:   3'- -UCGCUU--------UGCuUGUGCGggACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 115563 0.71 0.613272
Target:  5'- cGGCGGcacuCGGGCGcCGCCCagGCGCCg- -3'
miRNA:   3'- -UCGCUuu--GCUUGU-GCGGGa-CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 115339 0.66 0.867009
Target:  5'- -cCGGGACGuguacuucaugcGCACGCUgUGCGCCUc -3'
miRNA:   3'- ucGCUUUGCu-----------UGUGCGGgACGCGGAc -5'
23565 3' -56.1 NC_005261.1 + 114872 0.68 0.782927
Target:  5'- cGGCGuuugucACGGccgacacGCGCGCgCUGCGCCg- -3'
miRNA:   3'- -UCGCuu----UGCU-------UGUGCGgGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 114328 0.66 0.8759
Target:  5'- cGGCGcaAggUGGACugGCUCgagcgGCGCgUGg -3'
miRNA:   3'- -UCGC--UuuGCUUGugCGGGa----CGCGgAC- -5'
23565 3' -56.1 NC_005261.1 + 113143 0.67 0.83686
Target:  5'- cGGCGGcugAACGuggagauCGCCgaGCGCCUGc -3'
miRNA:   3'- -UCGCU---UUGCuugu---GCGGgaCGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 111844 0.75 0.400689
Target:  5'- cGCGGAGCGcguGCGCGCCaaccGCGCCUu -3'
miRNA:   3'- uCGCUUUGCu--UGUGCGGga--CGCGGAc -5'
23565 3' -56.1 NC_005261.1 + 111746 0.66 0.860909
Target:  5'- cGUGAAguGCGGGCAgcucgUGCaCCUGCGCUg- -3'
miRNA:   3'- uCGCUU--UGCUUGU-----GCG-GGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 111270 0.69 0.735795
Target:  5'- cGCugaGAGCGAGCACccgGCCC-GCGCCUu -3'
miRNA:   3'- uCGc--UUUGCUUGUG---CGGGaCGCGGAc -5'
23565 3' -56.1 NC_005261.1 + 110065 0.69 0.735795
Target:  5'- cAGCGAGACgGGGgGCGCCCgaGCGgCg- -3'
miRNA:   3'- -UCGCUUUG-CUUgUGCGGGa-CGCgGac -5'
23565 3' -56.1 NC_005261.1 + 109996 0.7 0.685433
Target:  5'- aGGuCGucgUGGACACGCCCgccgGCGCCg- -3'
miRNA:   3'- -UC-GCuuuGCUUGUGCGGGa---CGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.