miRNA display CGI


Results 101 - 120 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 109447 0.66 0.860909
Target:  5'- cGCGGccGCGA--GCGCCC-GCGCCg- -3'
miRNA:   3'- uCGCUu-UGCUugUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 109348 0.67 0.853095
Target:  5'- gGGCGcAGGCGGcgGCGUCC-GCGCCg- -3'
miRNA:   3'- -UCGC-UUUGCUugUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 109092 0.67 0.819866
Target:  5'- gGGCGGguccGGCGGG-GCGCCCcccgGCGCCa- -3'
miRNA:   3'- -UCGCU----UUGCUUgUGCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 109008 0.66 0.883065
Target:  5'- cGGCGuagccugcGCGGgccccagucGCGCGCCCgcgcggGCGCCg- -3'
miRNA:   3'- -UCGCuu------UGCU---------UGUGCGGGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 108911 0.68 0.752454
Target:  5'- gAGCGggGCGcggggucggggcccAGCACGCCCacgcaCGCCg- -3'
miRNA:   3'- -UCGCuuUGC--------------UUGUGCGGGac---GCGGac -5'
23565 3' -56.1 NC_005261.1 + 108416 0.71 0.633939
Target:  5'- gAGCGcgGCGcGgGCGCCC-GCGCCg- -3'
miRNA:   3'- -UCGCuuUGCuUgUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 107954 0.68 0.774487
Target:  5'- cAGCGuccAGGCGGGCGCGCgggCCgccGCGCCg- -3'
miRNA:   3'- -UCGC---UUUGCUUGUGCG---GGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 107748 0.68 0.793091
Target:  5'- cGCGggGgGGGcCACGCCCcaGCGCUc- -3'
miRNA:   3'- uCGCuuUgCUU-GUGCGGGa-CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 107088 0.67 0.810219
Target:  5'- cGCGAAGuggcaguCGAACAgCGCCCccagccGCGCCa- -3'
miRNA:   3'- uCGCUUU-------GCUUGU-GCGGGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 106902 0.71 0.592662
Target:  5'- cAGCGGcgcgcuggcGGCGAGCGCGCCCgcGgGCCc- -3'
miRNA:   3'- -UCGCU---------UUGCUUGUGCGGGa-CgCGGac -5'
23565 3' -56.1 NC_005261.1 + 106619 0.77 0.292102
Target:  5'- cGCGucGCGAgcagcaGCACGCCCUGCGCg-- -3'
miRNA:   3'- uCGCuuUGCU------UGUGCGGGACGCGgac -5'
23565 3' -56.1 NC_005261.1 + 106345 0.66 0.8759
Target:  5'- cGCGuAAGCGGccucgGCGCGCgCgaagGCGCCg- -3'
miRNA:   3'- uCGC-UUUGCU-----UGUGCGgGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 106240 0.69 0.705778
Target:  5'- cGGCGgcACGGGCACcgcggugcgcggGCCCagGCGCgUGg -3'
miRNA:   3'- -UCGCuuUGCUUGUG------------CGGGa-CGCGgAC- -5'
23565 3' -56.1 NC_005261.1 + 106021 0.66 0.868513
Target:  5'- cAGCGAGGacCGGagGCACGCCaCcGCGCUg- -3'
miRNA:   3'- -UCGCUUU--GCU--UGUGCGG-GaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 105670 0.7 0.654601
Target:  5'- cGCGGAagACGccCACGCCCaugGCGCCc- -3'
miRNA:   3'- uCGCUU--UGCuuGUGCGGGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 104749 0.66 0.860909
Target:  5'- cGCGGGccccGCGAGCGgGCCCggcugcggcgGCGgCUGc -3'
miRNA:   3'- uCGCUU----UGCUUGUgCGGGa---------CGCgGAC- -5'
23565 3' -56.1 NC_005261.1 + 104601 0.66 0.860909
Target:  5'- gGGCGGGguGCgGGGCGCGCCCccGgGCCc- -3'
miRNA:   3'- -UCGCUU--UG-CUUGUGCGGGa-CgCGGac -5'
23565 3' -56.1 NC_005261.1 + 104471 0.73 0.521805
Target:  5'- cGCGGGccccGCGAGCGgGCCCggccccgGCGCCg- -3'
miRNA:   3'- uCGCUU----UGCUUGUgCGGGa------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 104367 0.66 0.883065
Target:  5'- aGGCGGgcGGCGGggggcccucccgGCcCGCCCaGCGCCa- -3'
miRNA:   3'- -UCGCU--UUGCU------------UGuGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 104221 0.66 0.860909
Target:  5'- cGCGcgGCGcGCACcguGCCCUccaGCGCCa- -3'
miRNA:   3'- uCGCuuUGCuUGUG---CGGGA---CGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.