miRNA display CGI


Results 121 - 140 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 104014 0.66 0.883065
Target:  5'- cGCGucuGCGucCGCGUCCgacGCGCCg- -3'
miRNA:   3'- uCGCuu-UGCuuGUGCGGGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 103872 0.67 0.853885
Target:  5'- cGGCGggGCGGcgccgccgggcgGCGCGCCaagccgggccacccGCGCCg- -3'
miRNA:   3'- -UCGCuuUGCU------------UGUGCGGga------------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 103835 0.67 0.83686
Target:  5'- cGCGGAG-GAGCuCGCCCuUGCGCg-- -3'
miRNA:   3'- uCGCUUUgCUUGuGCGGG-ACGCGgac -5'
23565 3' -56.1 NC_005261.1 + 103722 0.66 0.863976
Target:  5'- cGGCGucuagcuccuucuuGGCGGcgGCGCCCUcCGCCUGc -3'
miRNA:   3'- -UCGCu-------------UUGCUugUGCGGGAcGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 103318 0.67 0.83686
Target:  5'- cAGCGGcagcAGC-AGCGCGUCCagGCGCCg- -3'
miRNA:   3'- -UCGCU----UUGcUUGUGCGGGa-CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 103087 0.68 0.793091
Target:  5'- cGCGAAGgcCGGGCccagcccggccaGCGCCCccgGCGCCa- -3'
miRNA:   3'- uCGCUUU--GCUUG------------UGCGGGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 102879 0.68 0.764985
Target:  5'- aGGCGAAcuCGGGCGggaGCCCcGCGCCc- -3'
miRNA:   3'- -UCGCUUu-GCUUGUg--CGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 102799 0.7 0.644275
Target:  5'- cGCGAGcGCGGcgcccagccgccGCGCGCCgguCUGCGCCUc -3'
miRNA:   3'- uCGCUU-UGCU------------UGUGCGG---GACGCGGAc -5'
23565 3' -56.1 NC_005261.1 + 102797 0.66 0.883065
Target:  5'- cGCGggGCGGGCggGCGCuUCUGcCGUCa- -3'
miRNA:   3'- uCGCuuUGCUUG--UGCG-GGAC-GCGGac -5'
23565 3' -56.1 NC_005261.1 + 102769 0.69 0.71586
Target:  5'- -cCGGGACGcGCGCGCgCC-GCGCCUa -3'
miRNA:   3'- ucGCUUUGCuUGUGCG-GGaCGCGGAc -5'
23565 3' -56.1 NC_005261.1 + 102764 0.74 0.436102
Target:  5'- cGCGGAcGCGAGCGCGCCCgagGCCUc -3'
miRNA:   3'- uCGCUU-UGCUUGUGCGGGacgCGGAc -5'
23565 3' -56.1 NC_005261.1 + 102361 0.68 0.802176
Target:  5'- aGGCGGAGCGcgccucAACGCGCuCCaGCGCg-- -3'
miRNA:   3'- -UCGCUUUGC------UUGUGCG-GGaCGCGgac -5'
23565 3' -56.1 NC_005261.1 + 101828 0.67 0.811104
Target:  5'- cAGCGc-GCGGcugaucuccgccGCGCGCCCgccgGCcGCCUGc -3'
miRNA:   3'- -UCGCuuUGCU------------UGUGCGGGa---CG-CGGAC- -5'
23565 3' -56.1 NC_005261.1 + 101690 0.75 0.418168
Target:  5'- cGGCGAAGCGGGCguggucgaaGCGCUccagCUGCGCCa- -3'
miRNA:   3'- -UCGCUUUGCUUG---------UGCGG----GACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 101441 0.69 0.705778
Target:  5'- aGGCGgcGCGGuccagcGCugGCCCcaGCGCCg- -3'
miRNA:   3'- -UCGCuuUGCU------UGugCGGGa-CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 101383 0.68 0.774487
Target:  5'- gGGCGGAgcGCGGGCuaGCCCccggGCGCCg- -3'
miRNA:   3'- -UCGCUU--UGCUUGugCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 101277 0.7 0.695632
Target:  5'- uGCGccGCGcGGCGgGCCUUGCGCCa- -3'
miRNA:   3'- uCGCuuUGC-UUGUgCGGGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 101100 0.67 0.845076
Target:  5'- cAGCGcgGcCGcGCGCGCCUUgGCGCCc- -3'
miRNA:   3'- -UCGCuuU-GCuUGUGCGGGA-CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 100965 0.67 0.83686
Target:  5'- cGCGGucucGugGAAgGCGCCCaGCGCg-- -3'
miRNA:   3'- uCGCU----UugCUUgUGCGGGaCGCGgac -5'
23565 3' -56.1 NC_005261.1 + 100876 0.66 0.883065
Target:  5'- gGGCG--GCGAGCAcCGCCC-GCggauaaagauGCCUGc -3'
miRNA:   3'- -UCGCuuUGCUUGU-GCGGGaCG----------CGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.