miRNA display CGI


Results 141 - 160 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 100809 0.66 0.890003
Target:  5'- -cCGGAA-GGGCGCGUgcgCCUGCGCCg- -3'
miRNA:   3'- ucGCUUUgCUUGUGCG---GGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 100312 0.66 0.868513
Target:  5'- cGCGucGCGGGCGCGCUCgaucuccagGCGCa-- -3'
miRNA:   3'- uCGCuuUGCUUGUGCGGGa--------CGCGgac -5'
23565 3' -56.1 NC_005261.1 + 100021 0.66 0.890003
Target:  5'- gAGCGAggUGuugagcagcAGCACGCCgCggcGCGCCc- -3'
miRNA:   3'- -UCGCUuuGC---------UUGUGCGG-Ga--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 99804 0.67 0.83686
Target:  5'- cGCGGAugGCGAacaGCGCGCCgUcCGCCg- -3'
miRNA:   3'- uCGCUU--UGCU---UGUGCGGgAcGCGGac -5'
23565 3' -56.1 NC_005261.1 + 99596 0.69 0.71586
Target:  5'- cAGCGAGuccaccGCGAGCGuCGUCCacaGCGCCg- -3'
miRNA:   3'- -UCGCUU------UGCUUGU-GCGGGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 99191 0.68 0.802176
Target:  5'- cGCGAccggaucaccgcGugGAGCugcucgcggACGCUCUGCGCgUGg -3'
miRNA:   3'- uCGCU------------UugCUUG---------UGCGGGACGCGgAC- -5'
23565 3' -56.1 NC_005261.1 + 98739 0.68 0.774487
Target:  5'- gGGCGAGggGCGAucaucguccgcgGCGgGCCCguugggGCGCCg- -3'
miRNA:   3'- -UCGCUU--UGCU------------UGUgCGGGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 98356 0.72 0.57217
Target:  5'- cGCGcgcGCGGccuGCugGCCgUGUGCCUGg -3'
miRNA:   3'- uCGCuu-UGCU---UGugCGGgACGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 98312 0.66 0.8759
Target:  5'- gGGCGGgcgccgccgccAGCGGcgGCGCGCCCcGUGUCg- -3'
miRNA:   3'- -UCGCU-----------UUGCU--UGUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 97636 0.68 0.783859
Target:  5'- gGGCGGAGCGGGCGCGggugCC-GCaCCUGg -3'
miRNA:   3'- -UCGCUUUGCUUGUGCg---GGaCGcGGAC- -5'
23565 3' -56.1 NC_005261.1 + 97408 0.68 0.755363
Target:  5'- cGCGGgcuuGGCGGGCGCGCC--GgGCCUGc -3'
miRNA:   3'- uCGCU----UUGCUUGUGCGGgaCgCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 97207 0.66 0.868513
Target:  5'- aAGCGccGCGGcCACGCUCggagGCGCUg- -3'
miRNA:   3'- -UCGCuuUGCUuGUGCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 97129 0.66 0.868513
Target:  5'- aGGCGccGCGGcCACGCUCggagGCGCUg- -3'
miRNA:   3'- -UCGCuuUGCUuGUGCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 97055 0.67 0.853095
Target:  5'- gGGCGGggggcGGCGGGCACGaUCCgcgucggagGCGCCg- -3'
miRNA:   3'- -UCGCU-----UUGCUUGUGC-GGGa--------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 97016 0.72 0.561985
Target:  5'- gGGCGGGccguCGGGCGCGCCCgGcCGCCc- -3'
miRNA:   3'- -UCGCUUu---GCUUGUGCGGGaC-GCGGac -5'
23565 3' -56.1 NC_005261.1 + 96045 0.78 0.272052
Target:  5'- cGUGGAGCGGcuCGCGCCCUGCGUCc- -3'
miRNA:   3'- uCGCUUUGCUu-GUGCGGGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 95886 0.67 0.853095
Target:  5'- gGGCGcccucuuAACGcGCGCGCCCgcgcgGCGCgCUc -3'
miRNA:   3'- -UCGCu------UUGCuUGUGCGGGa----CGCG-GAc -5'
23565 3' -56.1 NC_005261.1 + 95765 0.68 0.793091
Target:  5'- gGGCGccGgGAGCcucGCGCgCUGCGCCg- -3'
miRNA:   3'- -UCGCuuUgCUUG---UGCGgGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 95637 0.69 0.71586
Target:  5'- gAGCGGcugGGCGAGCGCGaCgCgcgGCGCCg- -3'
miRNA:   3'- -UCGCU---UUGCUUGUGC-GgGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 95413 0.66 0.860909
Target:  5'- cGGCGGAGCaGAACaACGCCacgCUG-GCCUc -3'
miRNA:   3'- -UCGCUUUG-CUUG-UGCGG---GACgCGGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.