miRNA display CGI


Results 81 - 100 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 133396 0.72 0.531754
Target:  5'- uGCGgcGCGGACGcCGCcgCCUGCGCCc- -3'
miRNA:   3'- uCGCuuUGCUUGU-GCG--GGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 55647 0.72 0.531754
Target:  5'- cAGCGcAACGAGgACGCgCUGCGCgaGc -3'
miRNA:   3'- -UCGCuUUGCUUgUGCGgGACGCGgaC- -5'
23565 3' -56.1 NC_005261.1 + 64509 0.72 0.541772
Target:  5'- cGCGcAAGCGcGCACGCcgaccgcgguCCUGCGCCa- -3'
miRNA:   3'- uCGC-UUUGCuUGUGCG----------GGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 83450 0.72 0.55185
Target:  5'- cGGCGggGCGcGC-CGUCCUGuCGCCc- -3'
miRNA:   3'- -UCGCuuUGCuUGuGCGGGAC-GCGGac -5'
23565 3' -56.1 NC_005261.1 + 12145 0.72 0.555898
Target:  5'- cGCGaAGAUGGGCGCGCCCgccgaggccggcggGCGgCUGg -3'
miRNA:   3'- uCGC-UUUGCUUGUGCGGGa-------------CGCgGAC- -5'
23565 3' -56.1 NC_005261.1 + 82158 0.72 0.561985
Target:  5'- uAGCG-AGCGGACugcuCGCCCaggGCGCCc- -3'
miRNA:   3'- -UCGCuUUGCUUGu---GCGGGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 133103 0.72 0.561985
Target:  5'- cGCGAGcgccgGCGGGC-CGCCC-GCGCCg- -3'
miRNA:   3'- uCGCUU-----UGCUUGuGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 42023 0.73 0.521805
Target:  5'- aGGcCGAucguCGGGCGCGCCCagUGCGCgUGg -3'
miRNA:   3'- -UC-GCUuu--GCUUGUGCGGG--ACGCGgAC- -5'
23565 3' -56.1 NC_005261.1 + 79071 0.73 0.511929
Target:  5'- gGGCuGggGCGGgcgccGCGCGCCCggggcGCGCCg- -3'
miRNA:   3'- -UCG-CuuUGCU-----UGUGCGGGa----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 40308 0.73 0.510946
Target:  5'- uGGCGGccaguacAGCGGGgACGCCCgGCGCCc- -3'
miRNA:   3'- -UCGCU-------UUGCUUgUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 17567 0.74 0.445234
Target:  5'- cGCGAGAUcacaGGCGCGCCC-GCGCCUu -3'
miRNA:   3'- uCGCUUUGc---UUGUGCGGGaCGCGGAc -5'
23565 3' -56.1 NC_005261.1 + 18497 0.73 0.477056
Target:  5'- gGGCGggGCGcgcgggaagggguugGGCACGCCCUccucaucgccGCGCgUGg -3'
miRNA:   3'- -UCGCuuUGC---------------UUGUGCGGGA----------CGCGgAC- -5'
23565 3' -56.1 NC_005261.1 + 94818 0.73 0.482789
Target:  5'- cGGCG--GCGGAgGcCGCCCccgGCGCCUGg -3'
miRNA:   3'- -UCGCuuUGCUUgU-GCGGGa--CGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 64271 0.73 0.482789
Target:  5'- cAGaCGGccCGGGCGCGCCCcGCGUCUGc -3'
miRNA:   3'- -UC-GCUuuGCUUGUGCGGGaCGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 81712 0.73 0.482789
Target:  5'- cGCGcGACGAACGCgGCCaCUugcgcaaacGCGCCUGa -3'
miRNA:   3'- uCGCuUUGCUUGUG-CGG-GA---------CGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 7594 0.73 0.492416
Target:  5'- cGGCG-AGCGcacGCGCGCCCcGCGCgCUGu -3'
miRNA:   3'- -UCGCuUUGCu--UGUGCGGGaCGCG-GAC- -5'
23565 3' -56.1 NC_005261.1 + 127703 0.73 0.502131
Target:  5'- gGGCGAcAGCGAGCGCGCCgCgGgGCCc- -3'
miRNA:   3'- -UCGCU-UUGCUUGUGCGG-GaCgCGGac -5'
23565 3' -56.1 NC_005261.1 + 2454 0.73 0.502131
Target:  5'- -cCGAcAGCGGcACGCGCUCUGCGCCg- -3'
miRNA:   3'- ucGCU-UUGCU-UGUGCGGGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 87571 0.73 0.502131
Target:  5'- cGCGGAcuuggGCGAGCGCGUUCgccgGCGCCa- -3'
miRNA:   3'- uCGCUU-----UGCUUGUGCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 98356 0.72 0.57217
Target:  5'- cGCGcgcGCGGccuGCugGCCgUGUGCCUGg -3'
miRNA:   3'- uCGCuu-UGCU---UGugCGGgACGCGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.