miRNA display CGI


Results 101 - 120 of 528 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 62756 0.71 0.592662
Target:  5'- uAGCGGcccGCGccGC-CGCCCgGCGCCUGg -3'
miRNA:   3'- -UCGCUu--UGCu-UGuGCGGGaCGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 21707 0.71 0.592662
Target:  5'- cGCGGAGCG-GCGgGCCUcGCGCCg- -3'
miRNA:   3'- uCGCUUUGCuUGUgCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 84219 0.71 0.592662
Target:  5'- cGCGAAGCGcuCGCGgCg-GCGCCUGu -3'
miRNA:   3'- uCGCUUUGCuuGUGCgGgaCGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 106902 0.71 0.592662
Target:  5'- cAGCGGcgcgcuggcGGCGAGCGCGCCCgcGgGCCc- -3'
miRNA:   3'- -UCGCU---------UUGCUUGUGCGGGa-CgCGGac -5'
23565 3' -56.1 NC_005261.1 + 127938 0.71 0.592662
Target:  5'- cGGCGAGGCGcuGCGCGUCgggGCGCCa- -3'
miRNA:   3'- -UCGCUUUGCu-UGUGCGGga-CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 83450 0.72 0.55185
Target:  5'- cGGCGggGCGcGC-CGUCCUGuCGCCc- -3'
miRNA:   3'- -UCGCuuUGCuUGuGCGGGAC-GCGGac -5'
23565 3' -56.1 NC_005261.1 + 64509 0.72 0.541772
Target:  5'- cGCGcAAGCGcGCACGCcgaccgcgguCCUGCGCCa- -3'
miRNA:   3'- uCGC-UUUGCuUGUGCG----------GGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 81712 0.73 0.482789
Target:  5'- cGCGcGACGAACGCgGCCaCUugcgcaaacGCGCCUGa -3'
miRNA:   3'- uCGCuUUGCUUGUG-CGG-GA---------CGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 7594 0.73 0.492416
Target:  5'- cGGCG-AGCGcacGCGCGCCCcGCGCgCUGu -3'
miRNA:   3'- -UCGCuUUGCu--UGUGCGGGaCGCG-GAC- -5'
23565 3' -56.1 NC_005261.1 + 127703 0.73 0.502131
Target:  5'- gGGCGAcAGCGAGCGCGCCgCgGgGCCc- -3'
miRNA:   3'- -UCGCU-UUGCUUGUGCGG-GaCgCGGac -5'
23565 3' -56.1 NC_005261.1 + 2454 0.73 0.502131
Target:  5'- -cCGAcAGCGGcACGCGCUCUGCGCCg- -3'
miRNA:   3'- ucGCU-UUGCU-UGUGCGGGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 87571 0.73 0.502131
Target:  5'- cGCGGAcuuggGCGAGCGCGUUCgccgGCGCCa- -3'
miRNA:   3'- uCGCUU-----UGCUUGUGCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 40308 0.73 0.510946
Target:  5'- uGGCGGccaguacAGCGGGgACGCCCgGCGCCc- -3'
miRNA:   3'- -UCGCU-------UUGCUUgUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 79071 0.73 0.511929
Target:  5'- gGGCuGggGCGGgcgccGCGCGCCCggggcGCGCCg- -3'
miRNA:   3'- -UCG-CuuUGCU-----UGUGCGGGa----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 42023 0.73 0.521805
Target:  5'- aGGcCGAucguCGGGCGCGCCCagUGCGCgUGg -3'
miRNA:   3'- -UC-GCUuu--GCUUGUGCGGG--ACGCGgAC- -5'
23565 3' -56.1 NC_005261.1 + 104471 0.73 0.521805
Target:  5'- cGCGGGccccGCGAGCGgGCCCggccccgGCGCCg- -3'
miRNA:   3'- uCGCUU----UGCUUGUgCGGGa------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 53259 0.72 0.531754
Target:  5'- cGGCGcaucGCGGACGCGCCC-GaCGCCUc -3'
miRNA:   3'- -UCGCuu--UGCUUGUGCGGGaC-GCGGAc -5'
23565 3' -56.1 NC_005261.1 + 80535 0.72 0.531754
Target:  5'- uGGaCGAGGCccuGCugGCCCUGUGCCc- -3'
miRNA:   3'- -UC-GCUUUGcu-UGugCGGGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 133396 0.72 0.531754
Target:  5'- uGCGgcGCGGACGcCGCcgCCUGCGCCc- -3'
miRNA:   3'- uCGCuuUGCUUGU-GCG--GGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 55647 0.72 0.531754
Target:  5'- cAGCGcAACGAGgACGCgCUGCGCgaGc -3'
miRNA:   3'- -UCGCuUUGCUUgUGCGgGACGCGgaC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.