Results 121 - 140 of 528 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23565 | 3' | -56.1 | NC_005261.1 | + | 70540 | 0.71 | 0.622569 |
Target: 5'- gGGCGAcGugGAcuucuugACGCGCUCaccGCGCCUGg -3' miRNA: 3'- -UCGCU-UugCU-------UGUGCGGGa--CGCGGAC- -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 37688 | 0.71 | 0.623602 |
Target: 5'- cGCGAGGCGGACucggagaucgACGCgCUGgCGCCg- -3' miRNA: 3'- uCGCUUUGCUUG----------UGCGgGAC-GCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 62713 | 0.72 | 0.582398 |
Target: 5'- cAGCGcgGCGAcCACGgCgUGCGCCUc -3' miRNA: 3'- -UCGCuuUGCUuGUGCgGgACGCGGAc -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 13970 | 0.72 | 0.582398 |
Target: 5'- gGGCGc-GCGGGCgGCGCCgCgcgGCGCCUGc -3' miRNA: 3'- -UCGCuuUGCUUG-UGCGG-Ga--CGCGGAC- -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 122855 | 0.72 | 0.582398 |
Target: 5'- cGGCGGcgcCGAGgGCGCCgaGCGCCg- -3' miRNA: 3'- -UCGCUuu-GCUUgUGCGGgaCGCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 79071 | 0.73 | 0.511929 |
Target: 5'- gGGCuGggGCGGgcgccGCGCGCCCggggcGCGCCg- -3' miRNA: 3'- -UCG-CuuUGCU-----UGUGCGGGa----CGCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 42023 | 0.73 | 0.521805 |
Target: 5'- aGGcCGAucguCGGGCGCGCCCagUGCGCgUGg -3' miRNA: 3'- -UC-GCUuu--GCUUGUGCGGG--ACGCGgAC- -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 104471 | 0.73 | 0.521805 |
Target: 5'- cGCGGGccccGCGAGCGgGCCCggccccgGCGCCg- -3' miRNA: 3'- uCGCUU----UGCUUGUgCGGGa------CGCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 53259 | 0.72 | 0.531754 |
Target: 5'- cGGCGcaucGCGGACGCGCCC-GaCGCCUc -3' miRNA: 3'- -UCGCuu--UGCUUGUGCGGGaC-GCGGAc -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 80535 | 0.72 | 0.531754 |
Target: 5'- uGGaCGAGGCccuGCugGCCCUGUGCCc- -3' miRNA: 3'- -UC-GCUUUGcu-UGugCGGGACGCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 133396 | 0.72 | 0.531754 |
Target: 5'- uGCGgcGCGGACGcCGCcgCCUGCGCCc- -3' miRNA: 3'- uCGCuuUGCUUGU-GCG--GGACGCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 55647 | 0.72 | 0.531754 |
Target: 5'- cAGCGcAACGAGgACGCgCUGCGCgaGc -3' miRNA: 3'- -UCGCuUUGCUUgUGCGgGACGCGgaC- -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 73541 | 0.71 | 0.623602 |
Target: 5'- cGGCGGccccgGGACGCGCCCgGUGCCg- -3' miRNA: 3'- -UCGCUuug--CUUGUGCGGGaCGCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 64509 | 0.72 | 0.541772 |
Target: 5'- cGCGcAAGCGcGCACGCcgaccgcgguCCUGCGCCa- -3' miRNA: 3'- uCGC-UUUGCuUGUGCG----------GGACGCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 83450 | 0.72 | 0.55185 |
Target: 5'- cGGCGggGCGcGC-CGUCCUGuCGCCc- -3' miRNA: 3'- -UCGCuuUGCuUGuGCGGGAC-GCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 12145 | 0.72 | 0.555898 |
Target: 5'- cGCGaAGAUGGGCGCGCCCgccgaggccggcggGCGgCUGg -3' miRNA: 3'- uCGC-UUUGCUUGUGCGGGa-------------CGCgGAC- -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 82158 | 0.72 | 0.561985 |
Target: 5'- uAGCG-AGCGGACugcuCGCCCaggGCGCCc- -3' miRNA: 3'- -UCGCuUUGCUUGu---GCGGGa--CGCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 133103 | 0.72 | 0.561985 |
Target: 5'- cGCGAGcgccgGCGGGC-CGCCC-GCGCCg- -3' miRNA: 3'- uCGCUU-----UGCUUGuGCGGGaCGCGGac -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 98356 | 0.72 | 0.57217 |
Target: 5'- cGCGcgcGCGGccuGCugGCCgUGUGCCUGg -3' miRNA: 3'- uCGCuu-UGCU---UGugCGGgACGCGGAC- -5' |
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23565 | 3' | -56.1 | NC_005261.1 | + | 51522 | 0.72 | 0.57217 |
Target: 5'- cGGCGAAGCuGGACGCGCUggGCGCgUa -3' miRNA: 3'- -UCGCUUUG-CUUGUGCGGgaCGCGgAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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