miRNA display CGI


Results 61 - 80 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 97207 0.66 0.868513
Target:  5'- aAGCGccGCGGcCACGCUCggagGCGCUg- -3'
miRNA:   3'- -UCGCuuUGCUuGUGCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 21016 0.66 0.868513
Target:  5'- gGGCGuGACaccgagcccuggGGGCGCGCaCCgUGCGCCa- -3'
miRNA:   3'- -UCGCuUUG------------CUUGUGCG-GG-ACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 100809 0.66 0.890003
Target:  5'- -cCGGAA-GGGCGCGUgcgCCUGCGCCg- -3'
miRNA:   3'- ucGCUUUgCUUGUGCG---GGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 13048 0.66 0.890003
Target:  5'- cGCGggGcCGcGCGCGCCCcugccggGCGCg-- -3'
miRNA:   3'- uCGCuuU-GCuUGUGCGGGa------CGCGgac -5'
23565 3' -56.1 NC_005261.1 + 82671 0.66 0.883065
Target:  5'- gAGCGccuCGAGC-CGCUCgucggGCGCCa- -3'
miRNA:   3'- -UCGCuuuGCUUGuGCGGGa----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 4491 0.66 0.883065
Target:  5'- cGGCGuagccugcGCGGgccccagucGCGCGCCCgcgcggGCGCCg- -3'
miRNA:   3'- -UCGCuu------UGCU---------UGUGCGGGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 98312 0.66 0.8759
Target:  5'- gGGCGGgcgccgccgccAGCGGcgGCGCGCCCcGUGUCg- -3'
miRNA:   3'- -UCGCU-----------UUGCU--UGUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 114328 0.66 0.8759
Target:  5'- cGGCGcaAggUGGACugGCUCgagcgGCGCgUGg -3'
miRNA:   3'- -UCGC--UuuGCUUGugCGGGa----CGCGgAC- -5'
23565 3' -56.1 NC_005261.1 + 68240 0.66 0.8759
Target:  5'- cGGCGggGgcguguucgUGGACugccugGCGCgCCUGCGCCc- -3'
miRNA:   3'- -UCGCuuU---------GCUUG------UGCG-GGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 1828 0.66 0.8759
Target:  5'- cGCGuAAGCGGccucgGCGCGCgCgaagGCGCCg- -3'
miRNA:   3'- uCGC-UUUGCU-----UGUGCGgGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 136483 0.67 0.845076
Target:  5'- cGCGGgcagcAGCGAGCA-GCUCgGCGCCg- -3'
miRNA:   3'- uCGCU-----UUGCUUGUgCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 4831 0.67 0.853095
Target:  5'- gGGCGcAGGCGGcgGCGUCC-GCGCCg- -3'
miRNA:   3'- -UCGC-UUUGCUugUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 17195 0.66 0.865497
Target:  5'- cGCGGcGGCGAgcaGCGCGCCCagcacggacagcaGCGCCa- -3'
miRNA:   3'- uCGCU-UUGCU---UGUGCGGGa------------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 137766 0.66 0.860909
Target:  5'- gGGCGGGguGCgGGGCGCGCCCccGgGCCc- -3'
miRNA:   3'- -UCGCUU--UG-CUUGUGCGGGa-CgCGGac -5'
23565 3' -56.1 NC_005261.1 + 72978 0.66 0.860909
Target:  5'- cGCGGGgguccGCGAGCGCGgCCaGCGCg-- -3'
miRNA:   3'- uCGCUU-----UGCUUGUGCgGGaCGCGgac -5'
23565 3' -56.1 NC_005261.1 + 21869 0.66 0.860909
Target:  5'- cGCGcucGCGAacGCGCGCCCgcgGgGCCc- -3'
miRNA:   3'- uCGCuu-UGCU--UGUGCGGGa--CgCGGac -5'
23565 3' -56.1 NC_005261.1 + 83 0.66 0.860909
Target:  5'- gGGCGGGguGCgGGGCGCGCCCccGgGCCc- -3'
miRNA:   3'- -UCGCUU--UG-CUUGUGCGGGa-CgCGGac -5'
23565 3' -56.1 NC_005261.1 + 36922 0.66 0.860909
Target:  5'- gGGcCGGGACGuACuccgGgGCCCUGCGCUg- -3'
miRNA:   3'- -UC-GCUUUGCuUG----UgCGGGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 119466 0.67 0.853095
Target:  5'- cAGCacGACGGACgagACGCCCUuggggacgccgGCGCCg- -3'
miRNA:   3'- -UCGcuUUGCUUG---UGCGGGA-----------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 75535 0.67 0.853095
Target:  5'- cGCGcugcAGCGGcuGCGCGUCCUGCcgGCCa- -3'
miRNA:   3'- uCGCu---UUGCU--UGUGCGGGACG--CGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.