miRNA display CGI


Results 81 - 100 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 137914 0.66 0.860909
Target:  5'- cGCGGGccccGCGAGCGgGCCCggcugcggcgGCGgCUGc -3'
miRNA:   3'- uCGCUU----UGCUUGUgCGGGa---------CGCgGAC- -5'
23565 3' -56.1 NC_005261.1 + 95413 0.66 0.860909
Target:  5'- cGGCGGAGCaGAACaACGCCacgCUG-GCCUc -3'
miRNA:   3'- -UCGCUUUG-CUUG-UGCGG---GACgCGGAc -5'
23565 3' -56.1 NC_005261.1 + 63002 0.66 0.860909
Target:  5'- cGGCccucGGCGGcCGCGCCCgcgcggGCGCCg- -3'
miRNA:   3'- -UCGcu--UUGCUuGUGCGGGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 4930 0.66 0.860909
Target:  5'- cGCGGccGCGA--GCGCCC-GCGCCg- -3'
miRNA:   3'- uCGCUu-UGCUugUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 121908 0.66 0.860909
Target:  5'- uAGCu---CGucuGCGCGCCgUGCGCCg- -3'
miRNA:   3'- -UCGcuuuGCu--UGUGCGGgACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 119466 0.67 0.853095
Target:  5'- cAGCacGACGGACgagACGCCCUuggggacgccgGCGCCg- -3'
miRNA:   3'- -UCGcuUUGCUUG---UGCGGGA-----------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 75535 0.67 0.853095
Target:  5'- cGCGcugcAGCGGcuGCGCGUCCUGCcgGCCa- -3'
miRNA:   3'- uCGCu---UUGCU--UGUGCGGGACG--CGGac -5'
23565 3' -56.1 NC_005261.1 + 1828 0.66 0.8759
Target:  5'- cGCGuAAGCGGccucgGCGCGCgCgaagGCGCCg- -3'
miRNA:   3'- uCGC-UUUGCU-----UGUGCGgGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 68240 0.66 0.8759
Target:  5'- cGGCGggGgcguguucgUGGACugccugGCGCgCCUGCGCCc- -3'
miRNA:   3'- -UCGCuuU---------GCUUG------UGCG-GGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 114328 0.66 0.8759
Target:  5'- cGGCGcaAggUGGACugGCUCgagcgGCGCgUGg -3'
miRNA:   3'- -UCGC--UuuGCUUGugCGGGa----CGCGgAC- -5'
23565 3' -56.1 NC_005261.1 + 53467 0.67 0.845076
Target:  5'- gGGCGGGACGcAGCaggcgcgcacuaGCGCUC-GCGCCa- -3'
miRNA:   3'- -UCGCUUUGC-UUG------------UGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 21731 0.67 0.845076
Target:  5'- -uCGAGcCGAucgACACGCggcugCUGCGCCUGg -3'
miRNA:   3'- ucGCUUuGCU---UGUGCGg----GACGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 100965 0.67 0.83686
Target:  5'- cGCGGucucGugGAAgGCGCCCaGCGCg-- -3'
miRNA:   3'- uCGCU----UugCUUgUGCGGGaCGCGgac -5'
23565 3' -56.1 NC_005261.1 + 130840 0.67 0.83686
Target:  5'- uGCGcucaaccuuGCGcGCGCGCCCggccggGCGCCg- -3'
miRNA:   3'- uCGCuu-------UGCuUGUGCGGGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 42843 0.67 0.83686
Target:  5'- gGGCGAuggcagaguGCGAGCGCGUCgUguccgagcGCGCCUu -3'
miRNA:   3'- -UCGCUu--------UGCUUGUGCGGgA--------CGCGGAc -5'
23565 3' -56.1 NC_005261.1 + 100809 0.66 0.890003
Target:  5'- -cCGGAA-GGGCGCGUgcgCCUGCGCCg- -3'
miRNA:   3'- ucGCUUUgCUUGUGCG---GGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 13048 0.66 0.890003
Target:  5'- cGCGggGcCGcGCGCGCCCcugccggGCGCg-- -3'
miRNA:   3'- uCGCuuU-GCuUGUGCGGGa------CGCGgac -5'
23565 3' -56.1 NC_005261.1 + 82671 0.66 0.883065
Target:  5'- gAGCGccuCGAGC-CGCUCgucggGCGCCa- -3'
miRNA:   3'- -UCGCuuuGCUUGuGCGGGa----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 4491 0.66 0.883065
Target:  5'- cGGCGuagccugcGCGGgccccagucGCGCGCCCgcgcggGCGCCg- -3'
miRNA:   3'- -UCGCuu------UGCU---------UGUGCGGGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 98312 0.66 0.8759
Target:  5'- gGGCGGgcgccgccgccAGCGGcgGCGCGCCCcGUGUCg- -3'
miRNA:   3'- -UCGCU-----------UUGCU--UGUGCGGGaCGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.