miRNA display CGI


Results 101 - 120 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 94038 0.67 0.83686
Target:  5'- cGGCGGccCG-GCGCGCCCccccagcgGCGCCg- -3'
miRNA:   3'- -UCGCUuuGCuUGUGCGGGa-------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 32112 0.67 0.83686
Target:  5'- gGGCGAGGCGGcCA-GCCaCcGCGCCg- -3'
miRNA:   3'- -UCGCUUUGCUuGUgCGG-GaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 88091 0.67 0.828454
Target:  5'- uGCGAAcgggGCGAG-GCGCCCccgcGCGCCg- -3'
miRNA:   3'- uCGCUU----UGCUUgUGCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 42172 0.67 0.823323
Target:  5'- aAGCGAGccguggacgcagggcGCGAGC-CGCUCcacgGCGCCg- -3'
miRNA:   3'- -UCGCUU---------------UGCUUGuGCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 33619 0.67 0.819866
Target:  5'- cGGCGggGCccggGGGCGCGCCCcGCaCCc- -3'
miRNA:   3'- -UCGCuuUG----CUUGUGCGGGaCGcGGac -5'
23565 3' -56.1 NC_005261.1 + 4930 0.66 0.860909
Target:  5'- cGCGGccGCGA--GCGCCC-GCGCCg- -3'
miRNA:   3'- uCGCUu-UGCUugUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 63002 0.66 0.860909
Target:  5'- cGGCccucGGCGGcCGCGCCCgcgcggGCGCCg- -3'
miRNA:   3'- -UCGcu--UUGCUuGUGCGGGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 100809 0.66 0.890003
Target:  5'- -cCGGAA-GGGCGCGUgcgCCUGCGCCg- -3'
miRNA:   3'- ucGCUUUgCUUGUGCG---GGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 13048 0.66 0.890003
Target:  5'- cGCGggGcCGcGCGCGCCCcugccggGCGCg-- -3'
miRNA:   3'- uCGCuuU-GCuUGUGCGGGa------CGCGgac -5'
23565 3' -56.1 NC_005261.1 + 82671 0.66 0.883065
Target:  5'- gAGCGccuCGAGC-CGCUCgucggGCGCCa- -3'
miRNA:   3'- -UCGCuuuGCUUGuGCGGGa----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 4491 0.66 0.883065
Target:  5'- cGGCGuagccugcGCGGgccccagucGCGCGCCCgcgcggGCGCCg- -3'
miRNA:   3'- -UCGCuu------UGCU---------UGUGCGGGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 98312 0.66 0.8759
Target:  5'- gGGCGGgcgccgccgccAGCGGcgGCGCGCCCcGUGUCg- -3'
miRNA:   3'- -UCGCU-----------UUGCU--UGUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 114328 0.66 0.8759
Target:  5'- cGGCGcaAggUGGACugGCUCgagcgGCGCgUGg -3'
miRNA:   3'- -UCGC--UuuGCUUGugCGGGa----CGCGgAC- -5'
23565 3' -56.1 NC_005261.1 + 68240 0.66 0.8759
Target:  5'- cGGCGggGgcguguucgUGGACugccugGCGCgCCUGCGCCc- -3'
miRNA:   3'- -UCGCuuU---------GCUUG------UGCG-GGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 1828 0.66 0.8759
Target:  5'- cGCGuAAGCGGccucgGCGCGCgCgaagGCGCCg- -3'
miRNA:   3'- uCGC-UUUGCU-----UGUGCGgGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 97129 0.66 0.868513
Target:  5'- aGGCGccGCGGcCACGCUCggagGCGCUg- -3'
miRNA:   3'- -UCGCuuUGCUuGUGCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 69267 0.66 0.868513
Target:  5'- -nCGAccccGGCGAGC-CGCCC-GCGCCg- -3'
miRNA:   3'- ucGCU----UUGCUUGuGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 15769 0.66 0.866254
Target:  5'- cGCGAuacacaaggccgcuGGCGGGCGcCGCCCgcgcggccaGCGCCg- -3'
miRNA:   3'- uCGCU--------------UUGCUUGU-GCGGGa--------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 137914 0.66 0.860909
Target:  5'- cGCGGGccccGCGAGCGgGCCCggcugcggcgGCGgCUGc -3'
miRNA:   3'- uCGCUU----UGCUUGUgCGGGa---------CGCgGAC- -5'
23565 3' -56.1 NC_005261.1 + 95413 0.66 0.860909
Target:  5'- cGGCGGAGCaGAACaACGCCacgCUG-GCCUc -3'
miRNA:   3'- -UCGCUUUG-CUUG-UGCGG---GACgCGGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.