miRNA display CGI


Results 1 - 20 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 122695 0.66 0.860909
Target:  5'- cGCGucGCGAACgACGCCUUccGCuccuGCCUGc -3'
miRNA:   3'- uCGCuuUGCUUG-UGCGGGA--CG----CGGAC- -5'
23565 3' -56.1 NC_005261.1 + 19380 0.66 0.868513
Target:  5'- cGCGGG-CGcGC-CGCCCUccGCGCCg- -3'
miRNA:   3'- uCGCUUuGCuUGuGCGGGA--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 67692 0.66 0.8759
Target:  5'- cGGCGGGugGGGCGCGg---GCGCCg- -3'
miRNA:   3'- -UCGCUUugCUUGUGCgggaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 36385 0.66 0.860909
Target:  5'- aGGCGGccGGCGGGCGCGCggcggagaucagCC-GCGCgCUGg -3'
miRNA:   3'- -UCGCU--UUGCUUGUGCG------------GGaCGCG-GAC- -5'
23565 3' -56.1 NC_005261.1 + 43816 0.66 0.860909
Target:  5'- cGGCGccGCGGACgucGCGCCCUuCGUCg- -3'
miRNA:   3'- -UCGCuuUGCUUG---UGCGGGAcGCGGac -5'
23565 3' -56.1 NC_005261.1 + 67642 0.66 0.860909
Target:  5'- gGGCG-GGC--GCACGCCgCUGCGCUc- -3'
miRNA:   3'- -UCGCuUUGcuUGUGCGG-GACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 34799 0.66 0.860909
Target:  5'- cGCGAGGCGcGCGCGCgCgUG-GCCg- -3'
miRNA:   3'- uCGCUUUGCuUGUGCG-GgACgCGGac -5'
23565 3' -56.1 NC_005261.1 + 82776 0.66 0.860909
Target:  5'- aAGCGA--CG-ACugGCCCaccGCGCCg- -3'
miRNA:   3'- -UCGCUuuGCuUGugCGGGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 126386 0.66 0.860909
Target:  5'- cGCGcucGCGAacGCGCGCCCgcgGgGCCc- -3'
miRNA:   3'- uCGCuu-UGCU--UGUGCGGGa--CgCGGac -5'
23565 3' -56.1 NC_005261.1 + 104749 0.66 0.860909
Target:  5'- cGCGGGccccGCGAGCGgGCCCggcugcggcgGCGgCUGc -3'
miRNA:   3'- uCGCUU----UGCUUGUgCGGGa---------CGCgGAC- -5'
23565 3' -56.1 NC_005261.1 + 22034 0.66 0.868513
Target:  5'- gAGCGcuucuGCGGcgACGCGCCCagcgGCGUCg- -3'
miRNA:   3'- -UCGCuu---UGCU--UGUGCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 33797 0.66 0.860909
Target:  5'- cGGCGAcGCGGGCcCGCUCaagcugugcgGCGCCg- -3'
miRNA:   3'- -UCGCUuUGCUUGuGCGGGa---------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 82855 0.66 0.868513
Target:  5'- cGGCGGcAGCGGcgGCGgGCCaggCUGgGCCUGc -3'
miRNA:   3'- -UCGCU-UUGCU--UGUgCGG---GACgCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 67289 0.66 0.860909
Target:  5'- cGGCGuucccGGCGGACGCGCag-GCGCUg- -3'
miRNA:   3'- -UCGCu----UUGCUUGUGCGggaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 78751 0.66 0.868513
Target:  5'- uGGCGcgGCGGcCGCGCCg-GCGCUg- -3'
miRNA:   3'- -UCGCuuUGCUuGUGCGGgaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 62559 0.66 0.860909
Target:  5'- cGGCGAGgaagagguucuGCGcGCGCGCCaggaacGCGCCg- -3'
miRNA:   3'- -UCGCUU-----------UGCuUGUGCGGga----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 36653 0.66 0.868513
Target:  5'- cGCGGAggccACGGcGCGCGCCgaGCGCa-- -3'
miRNA:   3'- uCGCUU----UGCU-UGUGCGGgaCGCGgac -5'
23565 3' -56.1 NC_005261.1 + 109447 0.66 0.860909
Target:  5'- cGCGGccGCGA--GCGCCC-GCGCCg- -3'
miRNA:   3'- uCGCUu-UGCUugUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 81583 0.66 0.860909
Target:  5'- uGGaaGAGCuccAGCGCGCCCcGCGUCUGg -3'
miRNA:   3'- -UCgcUUUGc--UUGUGCGGGaCGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 104601 0.66 0.860909
Target:  5'- gGGCGGGguGCgGGGCGCGCCCccGgGCCc- -3'
miRNA:   3'- -UCGCUU--UG-CUUGUGCGGGa-CgCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.