miRNA display CGI


Results 1 - 20 of 528 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 126363 1.09 0.002386
Target:  5'- cAGCGAAACGAACACGCCCUGCGCCUGg -3'
miRNA:   3'- -UCGCUUUGCUUGUGCGGGACGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 134238 0.8 0.207922
Target:  5'- cGGCGugGCGcACGCGCCCUGCGCg-- -3'
miRNA:   3'- -UCGCuuUGCuUGUGCGGGACGCGgac -5'
23565 3' -56.1 NC_005261.1 + 63866 0.79 0.22455
Target:  5'- gGGCGggGCGGACGCGgCCgccccuuccgccgccGCGCCUGc -3'
miRNA:   3'- -UCGCuuUGCUUGUGCgGGa--------------CGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 79598 0.78 0.253123
Target:  5'- uGGCGGgcGGCGAGCGCGCCCUGCuCUUu -3'
miRNA:   3'- -UCGCU--UUGCUUGUGCGGGACGcGGAc -5'
23565 3' -56.1 NC_005261.1 + 96045 0.78 0.272052
Target:  5'- cGUGGAGCGGcuCGCGCCCUGCGUCc- -3'
miRNA:   3'- uCGCUUUGCUu-GUGCGGGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 81828 0.78 0.285293
Target:  5'- cGCGAAGCGAGgGCGCCCaGgGCCc- -3'
miRNA:   3'- uCGCUUUGCUUgUGCGGGaCgCGGac -5'
23565 3' -56.1 NC_005261.1 + 81815 0.77 0.292102
Target:  5'- uGCGcgGCGGugACGCCCcGCGCCg- -3'
miRNA:   3'- uCGCuuUGCUugUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 2101 0.77 0.292102
Target:  5'- cGCGucGCGAgcagcaGCACGCCCUGCGCg-- -3'
miRNA:   3'- uCGCuuUGCU------UGUGCGGGACGCGgac -5'
23565 3' -56.1 NC_005261.1 + 106619 0.77 0.292102
Target:  5'- cGCGucGCGAgcagcaGCACGCCCUGCGCg-- -3'
miRNA:   3'- uCGCuuUGCU------UGUGCGGGACGCGgac -5'
23565 3' -56.1 NC_005261.1 + 12883 0.77 0.292102
Target:  5'- cGGCGGAGCcuGCuggACGCCCUGCGCgCUGc -3'
miRNA:   3'- -UCGCUUUGcuUG---UGCGGGACGCG-GAC- -5'
23565 3' -56.1 NC_005261.1 + 72470 0.77 0.299037
Target:  5'- cGGCGAGcGCGAGCGCGgCCaGCGCCa- -3'
miRNA:   3'- -UCGCUU-UGCUUGUGCgGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 131767 0.77 0.299037
Target:  5'- cGGCGcgGCGGGCGCGCCgCUGgGCCc- -3'
miRNA:   3'- -UCGCuuUGCUUGUGCGG-GACgCGGac -5'
23565 3' -56.1 NC_005261.1 + 7703 0.77 0.306099
Target:  5'- cGCGAcgAGCGGGCGCGCuucggccagcgCCUGCGCCa- -3'
miRNA:   3'- uCGCU--UUGCUUGUGCG-----------GGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 63282 0.77 0.306099
Target:  5'- gAGCGcgcCGAGCGCGCCC-GCGCCg- -3'
miRNA:   3'- -UCGCuuuGCUUGUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 11878 0.77 0.313288
Target:  5'- uGCGggGCGAGCcCGCCCgcacgcGCGCCc- -3'
miRNA:   3'- uCGCuuUGCUUGuGCGGGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 116395 0.77 0.313288
Target:  5'- uGCGggGCGAGCcCGCCCgcacgcGCGCCc- -3'
miRNA:   3'- uCGCuuUGCUUGuGCGGGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 11772 0.77 0.320604
Target:  5'- cGCGAGGCGAGCGCGCUg-GCGCggCUGg -3'
miRNA:   3'- uCGCUUUGCUUGUGCGGgaCGCG--GAC- -5'
23565 3' -56.1 NC_005261.1 + 60424 0.77 0.320604
Target:  5'- gGGCGGcagcucGGCGGGCGCGCCCU-CGCCg- -3'
miRNA:   3'- -UCGCU------UUGCUUGUGCGGGAcGCGGac -5'
23565 3' -56.1 NC_005261.1 + 35673 0.76 0.335619
Target:  5'- cGGCGAGGCGGuguC-CGCCggGCGCCUGg -3'
miRNA:   3'- -UCGCUUUGCUu--GuGCGGgaCGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 76436 0.76 0.347995
Target:  5'- cGGCGccauGGCGGACGCGCCCgacggcgacggcgGCGCCg- -3'
miRNA:   3'- -UCGCu---UUGCUUGUGCGGGa------------CGCGGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.