miRNA display CGI


Results 1 - 20 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 83 0.66 0.860909
Target:  5'- gGGCGGGguGCgGGGCGCGCCCccGgGCCc- -3'
miRNA:   3'- -UCGCUU--UG-CUUGUGCGGGa-CgCGGac -5'
23565 3' -56.1 NC_005261.1 + 231 0.66 0.860909
Target:  5'- cGCGGGccccGCGAGCGgGCCCggcugcggcgGCGgCUGc -3'
miRNA:   3'- uCGCUU----UGCUUGUgCGGGa---------CGCgGAC- -5'
23565 3' -56.1 NC_005261.1 + 453 0.67 0.819866
Target:  5'- cGGCGggGCccggGGGCGCGCCCcGCaCCc- -3'
miRNA:   3'- -UCGCuuUG----CUUGUGCGGGaCGcGGac -5'
23565 3' -56.1 NC_005261.1 + 1723 0.69 0.705778
Target:  5'- cGGCGgcACGGGCACcgcggugcgcggGCCCagGCGCgUGg -3'
miRNA:   3'- -UCGCuuUGCUUGUG------------CGGGa-CGCGgAC- -5'
23565 3' -56.1 NC_005261.1 + 1828 0.66 0.8759
Target:  5'- cGCGuAAGCGGccucgGCGCGCgCgaagGCGCCg- -3'
miRNA:   3'- uCGC-UUUGCU-----UGUGCGgGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 2101 0.77 0.292102
Target:  5'- cGCGucGCGAgcagcaGCACGCCCUGCGCg-- -3'
miRNA:   3'- uCGCuuUGCU------UGUGCGGGACGCGgac -5'
23565 3' -56.1 NC_005261.1 + 2385 0.71 0.592662
Target:  5'- cAGCGGcgcgcuggcGGCGAGCGCGCCCgcGgGCCc- -3'
miRNA:   3'- -UCGCU---------UUGCUUGUGCGGGa-CgCGGac -5'
23565 3' -56.1 NC_005261.1 + 2454 0.73 0.502131
Target:  5'- -cCGAcAGCGGcACGCGCUCUGCGCCg- -3'
miRNA:   3'- ucGCU-UUGCU-UGUGCGGGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 3437 0.68 0.774487
Target:  5'- cAGCGuccAGGCGGGCGCGCgggCCgccGCGCCg- -3'
miRNA:   3'- -UCGC---UUUGCUUGUGCG---GGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 3899 0.71 0.633939
Target:  5'- gAGCGcgGCGcGgGCGCCC-GCGCCg- -3'
miRNA:   3'- -UCGCuuUGCuUgUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 4118 0.75 0.392126
Target:  5'- aGGCGGAagucggcgGCGAGCGCGCgCCggcGCGCCg- -3'
miRNA:   3'- -UCGCUU--------UGCUUGUGCG-GGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 4272 0.7 0.654601
Target:  5'- uGCGGcaaaGGcCGAACAUGCgCC-GCGCCUGg -3'
miRNA:   3'- uCGCU----UU-GCUUGUGCG-GGaCGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 4491 0.66 0.883065
Target:  5'- cGGCGuagccugcGCGGgccccagucGCGCGCCCgcgcggGCGCCg- -3'
miRNA:   3'- -UCGCuu------UGCU---------UGUGCGGGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 4553 0.7 0.654601
Target:  5'- cAGCGGAGCGAGC-CGUUg-GCGCCg- -3'
miRNA:   3'- -UCGCUUUGCUUGuGCGGgaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 4575 0.67 0.819866
Target:  5'- gGGCGGguccGGCGGG-GCGCCCcccgGCGCCa- -3'
miRNA:   3'- -UCGCU----UUGCUUgUGCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 4603 0.76 0.367164
Target:  5'- cGGCGcgGCGAGCGCgGCCCacaGCGCCa- -3'
miRNA:   3'- -UCGCuuUGCUUGUG-CGGGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 4817 0.69 0.71586
Target:  5'- gAGCGAcaccAGCGAGCGgGCCUUGUuuuggGCCg- -3'
miRNA:   3'- -UCGCU----UUGCUUGUgCGGGACG-----CGGac -5'
23565 3' -56.1 NC_005261.1 + 4831 0.67 0.853095
Target:  5'- gGGCGcAGGCGGcgGCGUCC-GCGCCg- -3'
miRNA:   3'- -UCGC-UUUGCUugUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 4930 0.66 0.860909
Target:  5'- cGCGGccGCGA--GCGCCC-GCGCCg- -3'
miRNA:   3'- uCGCUu-UGCUugUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 4953 0.69 0.705778
Target:  5'- -aCGAGGCGGGCgccgGCGCCCUgguacucgcGCGCCg- -3'
miRNA:   3'- ucGCUUUGCUUG----UGCGGGA---------CGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.