miRNA display CGI


Results 1 - 20 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 4118 0.75 0.392126
Target:  5'- aGGCGGAagucggcgGCGAGCGCGCgCCggcGCGCCg- -3'
miRNA:   3'- -UCGCUU--------UGCUUGUGCG-GGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 56802 0.76 0.35114
Target:  5'- cGCGggGCGGccgACgACGCcgCCUGUGCCUGg -3'
miRNA:   3'- uCGCuuUGCU---UG-UGCG--GGACGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 65358 0.76 0.35114
Target:  5'- cGGCGggGCGGACcUGCCCgcgguccaCGCCUGg -3'
miRNA:   3'- -UCGCuuUGCUUGuGCGGGac------GCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 60559 0.76 0.367164
Target:  5'- cGGCc---CGucCGCGCCCUGCGCCUGc -3'
miRNA:   3'- -UCGcuuuGCuuGUGCGGGACGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 4603 0.76 0.367164
Target:  5'- cGGCGcgGCGAGCGCgGCCCacaGCGCCa- -3'
miRNA:   3'- -UCGCuuUGCUUGUG-CGGGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 134660 0.76 0.367164
Target:  5'- cGGUGGAGCGcGCGCGCCUuagcgGCGCCg- -3'
miRNA:   3'- -UCGCUUUGCuUGUGCGGGa----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 80251 0.75 0.383684
Target:  5'- uGGCGgcGCGGccGCGCGCgCCUGCGUCg- -3'
miRNA:   3'- -UCGCuuUGCU--UGUGCG-GGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 131986 0.75 0.383684
Target:  5'- cGCGggGCGGGCAgGCCCUccccggGCGCacCUGg -3'
miRNA:   3'- uCGCuuUGCUUGUgCGGGA------CGCG--GAC- -5'
23565 3' -56.1 NC_005261.1 + 37245 0.75 0.392126
Target:  5'- uGGCGGAGCGcggcGACGCGCUggGCGCCUu -3'
miRNA:   3'- -UCGCUUUGC----UUGUGCGGgaCGCGGAc -5'
23565 3' -56.1 NC_005261.1 + 35673 0.76 0.335619
Target:  5'- cGGCGAGGCGGuguC-CGCCggGCGCCUGg -3'
miRNA:   3'- -UCGCUUUGCUu--GuGCGGgaCGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 60424 0.77 0.320604
Target:  5'- gGGCGGcagcucGGCGGGCGCGCCCU-CGCCg- -3'
miRNA:   3'- -UCGCU------UUGCUUGUGCGGGAcGCGGac -5'
23565 3' -56.1 NC_005261.1 + 11772 0.77 0.320604
Target:  5'- cGCGAGGCGAGCGCGCUg-GCGCggCUGg -3'
miRNA:   3'- uCGCUUUGCUUGUGCGGgaCGCG--GAC- -5'
23565 3' -56.1 NC_005261.1 + 79598 0.78 0.253123
Target:  5'- uGGCGGgcGGCGAGCGCGCCCUGCuCUUu -3'
miRNA:   3'- -UCGCU--UUGCUUGUGCGGGACGcGGAc -5'
23565 3' -56.1 NC_005261.1 + 96045 0.78 0.272052
Target:  5'- cGUGGAGCGGcuCGCGCCCUGCGUCc- -3'
miRNA:   3'- uCGCUUUGCUu-GUGCGGGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 81828 0.78 0.285293
Target:  5'- cGCGAAGCGAGgGCGCCCaGgGCCc- -3'
miRNA:   3'- uCGCUUUGCUUgUGCGGGaCgCGGac -5'
23565 3' -56.1 NC_005261.1 + 12883 0.77 0.292102
Target:  5'- cGGCGGAGCcuGCuggACGCCCUGCGCgCUGc -3'
miRNA:   3'- -UCGCUUUGcuUG---UGCGGGACGCG-GAC- -5'
23565 3' -56.1 NC_005261.1 + 106619 0.77 0.292102
Target:  5'- cGCGucGCGAgcagcaGCACGCCCUGCGCg-- -3'
miRNA:   3'- uCGCuuUGCU------UGUGCGGGACGCGgac -5'
23565 3' -56.1 NC_005261.1 + 7703 0.77 0.306099
Target:  5'- cGCGAcgAGCGGGCGCGCuucggccagcgCCUGCGCCa- -3'
miRNA:   3'- uCGCU--UUGCUUGUGCG-----------GGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 63282 0.77 0.306099
Target:  5'- gAGCGcgcCGAGCGCGCCC-GCGCCg- -3'
miRNA:   3'- -UCGCuuuGCUUGUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 116395 0.77 0.313288
Target:  5'- uGCGggGCGAGCcCGCCCgcacgcGCGCCc- -3'
miRNA:   3'- uCGCuuUGCUUGuGCGGGa-----CGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.