miRNA display CGI


Results 21 - 40 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 55245 0.66 0.883769
Target:  5'- cGCGAGGCGGccgccuccgugcucgACGCgcaccacgucuuccGCCCgGCGCCg- -3'
miRNA:   3'- uCGCUUUGCU---------------UGUG--------------CGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 79032 0.66 0.883065
Target:  5'- -cCGggGCGccCGCGCCCUugGCGUCg- -3'
miRNA:   3'- ucGCuuUGCuuGUGCGGGA--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 109008 0.66 0.883065
Target:  5'- cGGCGuagccugcGCGGgccccagucGCGCGCCCgcgcggGCGCCg- -3'
miRNA:   3'- -UCGCuu------UGCU---------UGUGCGGGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 59071 0.66 0.883065
Target:  5'- cGCGGA--GAGCGCGCgCgggUGCGCCg- -3'
miRNA:   3'- uCGCUUugCUUGUGCGgG---ACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 34935 0.66 0.883065
Target:  5'- cGgGggGCGGccgGCGCGaCCCgggcccgGCGgCCUGg -3'
miRNA:   3'- uCgCuuUGCU---UGUGC-GGGa------CGC-GGAC- -5'
23565 3' -56.1 NC_005261.1 + 133815 0.66 0.883065
Target:  5'- cGGCGAGGC---CugGCCCggcagcGCGCCg- -3'
miRNA:   3'- -UCGCUUUGcuuGugCGGGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 82671 0.66 0.883065
Target:  5'- gAGCGccuCGAGC-CGCUCgucggGCGCCa- -3'
miRNA:   3'- -UCGCuuuGCUUGuGCGGGa----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 5107 0.66 0.883065
Target:  5'- cAGgGAGACGcGCACGCCgUGgaagGCCg- -3'
miRNA:   3'- -UCgCUUUGCuUGUGCGGgACg---CGGac -5'
23565 3' -56.1 NC_005261.1 + 4491 0.66 0.883065
Target:  5'- cGGCGuagccugcGCGGgccccagucGCGCGCCCgcgcggGCGCCg- -3'
miRNA:   3'- -UCGCuu------UGCU---------UGUGCGGGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 32086 0.66 0.883065
Target:  5'- cGGCGAGGCGGcacCAUGUCCgGCGUUg- -3'
miRNA:   3'- -UCGCUUUGCUu--GUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 43647 0.66 0.883065
Target:  5'- gGGCGGA--GGGCGCGUUCgGCGCCc- -3'
miRNA:   3'- -UCGCUUugCUUGUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 51454 0.66 0.883065
Target:  5'- gAGCGuguucGACGAGgACGUCaC-GUGCCUGg -3'
miRNA:   3'- -UCGCu----UUGCUUgUGCGG-GaCGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 119043 0.66 0.883065
Target:  5'- gGGCGAAgGCGAcUGCGCCCgGCaGCUg- -3'
miRNA:   3'- -UCGCUU-UGCUuGUGCGGGaCG-CGGac -5'
23565 3' -56.1 NC_005261.1 + 104014 0.66 0.883065
Target:  5'- cGCGucuGCGucCGCGUCCgacGCGCCg- -3'
miRNA:   3'- uCGCuu-UGCuuGUGCGGGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 104367 0.66 0.883065
Target:  5'- aGGCGGgcGGCGGggggcccucccgGCcCGCCCaGCGCCa- -3'
miRNA:   3'- -UCGCU--UUGCU------------UGuGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 56462 0.66 0.883065
Target:  5'- cGCGAGcuCGucCugGCCC-GCGCCg- -3'
miRNA:   3'- uCGCUUu-GCuuGugCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 36593 0.66 0.883065
Target:  5'- cGGCcaccgGggGgGGGCAgCGCuCCUGCGCCc- -3'
miRNA:   3'- -UCG-----CuuUgCUUGU-GCG-GGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 90228 0.66 0.883065
Target:  5'- cGGCGggGCGAcggcggcuGCgACGCCgUGUucGcCCUGg -3'
miRNA:   3'- -UCGCuuUGCU--------UG-UGCGGgACG--C-GGAC- -5'
23565 3' -56.1 NC_005261.1 + 102797 0.66 0.883065
Target:  5'- cGCGggGCGGGCggGCGCuUCUGcCGUCa- -3'
miRNA:   3'- uCGCuuUGCUUG--UGCG-GGAC-GCGGac -5'
23565 3' -56.1 NC_005261.1 + 100876 0.66 0.883065
Target:  5'- gGGCG--GCGAGCAcCGCCC-GCggauaaagauGCCUGc -3'
miRNA:   3'- -UCGCuuUGCUUGU-GCGGGaCG----------CGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.