miRNA display CGI


Results 81 - 100 of 537 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 134534 0.66 0.556834
Target:  5'- aGCUCCCgGUGCucucggcugcagcggGCCGCgGCcuGCCGGCc- -3'
miRNA:   3'- -CGGGGG-CAUG---------------UGGCGaCG--CGGCCGau -5'
23566 3' -63 NC_005261.1 + 34356 0.66 0.552958
Target:  5'- cGCCgCCCGgcgGCGCCGCccCGCCgccgccgcGGCUc -3'
miRNA:   3'- -CGG-GGGCa--UGUGGCGacGCGG--------CCGAu -5'
23566 3' -63 NC_005261.1 + 34279 0.66 0.552958
Target:  5'- gGCCgCCGcggucGCGCCGCUGCagcguCUGGCa- -3'
miRNA:   3'- -CGGgGGCa----UGUGGCGACGc----GGCCGau -5'
23566 3' -63 NC_005261.1 + 75344 0.66 0.543305
Target:  5'- -gCCCCGccucGCGCgGgCUGCGCCGcGCa- -3'
miRNA:   3'- cgGGGGCa---UGUGgC-GACGCGGC-CGau -5'
23566 3' -63 NC_005261.1 + 62382 0.66 0.562662
Target:  5'- gGCCgCCGUcgGCGCCGC-GCGCCa---- -3'
miRNA:   3'- -CGGgGGCA--UGUGGCGaCGCGGccgau -5'
23566 3' -63 NC_005261.1 + 39848 0.66 0.562662
Target:  5'- cGCCCCC--ACGCCGguaUUGCGCCcGCc- -3'
miRNA:   3'- -CGGGGGcaUGUGGC---GACGCGGcCGau -5'
23566 3' -63 NC_005261.1 + 101648 0.66 0.569483
Target:  5'- cCCCCCGgugGCCGCgGCGggcccccgcucagcUCGGCUAg -3'
miRNA:   3'- cGGGGGCaugUGGCGaCGC--------------GGCCGAU- -5'
23566 3' -63 NC_005261.1 + 65454 0.66 0.552958
Target:  5'- gGCCCCggacgCGUGCGCgGC--CGCCGuGCUGg -3'
miRNA:   3'- -CGGGG-----GCAUGUGgCGacGCGGC-CGAU- -5'
23566 3' -63 NC_005261.1 + 78193 0.66 0.552958
Target:  5'- cGCCgCCGUcgGCGCCGacgGCGgCgGGCUc -3'
miRNA:   3'- -CGGgGGCA--UGUGGCga-CGC-GgCCGAu -5'
23566 3' -63 NC_005261.1 + 136934 0.66 0.572412
Target:  5'- cGCCgCCGgcgACGggagccCCGCcggccuggGCGCCGGCa- -3'
miRNA:   3'- -CGGgGGCa--UGU------GGCGa-------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 132948 0.66 0.572412
Target:  5'- aCCCgCGcGCACCGCg--GCCGGCc- -3'
miRNA:   3'- cGGGgGCaUGUGGCGacgCGGCCGau -5'
23566 3' -63 NC_005261.1 + 19941 0.66 0.566557
Target:  5'- cGCCCCgGUGC-CCGCggcggcgucacgaagUGCGCgcagugcacCGGCa- -3'
miRNA:   3'- -CGGGGgCAUGuGGCG---------------ACGCG---------GCCGau -5'
23566 3' -63 NC_005261.1 + 43200 0.66 0.552958
Target:  5'- cGgCgCCGaGCGCCGCcgGCGgCGGCUu -3'
miRNA:   3'- -CgGgGGCaUGUGGCGa-CGCgGCCGAu -5'
23566 3' -63 NC_005261.1 + 44600 0.66 0.543305
Target:  5'- -aCCUCGcGCuGCUGCUGCugGCCGGCg- -3'
miRNA:   3'- cgGGGGCaUG-UGGCGACG--CGGCCGau -5'
23566 3' -63 NC_005261.1 + 10334 0.66 0.543305
Target:  5'- aGCCcaggCCCGgGC-CCGacggGCGCCGGCg- -3'
miRNA:   3'- -CGG----GGGCaUGuGGCga--CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 92208 0.66 0.547159
Target:  5'- cGCCCCCGUccuGCucccggacaucgccuGCCGCgcacacaugGCGcCCGuGCUGc -3'
miRNA:   3'- -CGGGGGCA---UG---------------UGGCGa--------CGC-GGC-CGAU- -5'
23566 3' -63 NC_005261.1 + 30199 0.66 0.544267
Target:  5'- uGCaCCCGUACuacgcggacgugcuGCCGCUGCuggggcugcccgacgGCgGGCUGg -3'
miRNA:   3'- -CGgGGGCAUG--------------UGGCGACG---------------CGgCCGAU- -5'
23566 3' -63 NC_005261.1 + 125262 0.66 0.543305
Target:  5'- gGCCCUCGcugucugggugUGCGCgCGCcGCGCgGGCc- -3'
miRNA:   3'- -CGGGGGC-----------AUGUG-GCGaCGCGgCCGau -5'
23566 3' -63 NC_005261.1 + 88024 0.66 0.543305
Target:  5'- cGCUugcaCCGggucgacGCGCUGCUGCaCCGGCUGc -3'
miRNA:   3'- -CGGg---GGCa------UGUGGCGACGcGGCCGAU- -5'
23566 3' -63 NC_005261.1 + 86907 0.66 0.572412
Target:  5'- aGCCCgaCGaAgGCgGCggcgGCGCCGGCg- -3'
miRNA:   3'- -CGGGg-GCaUgUGgCGa---CGCGGCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.