miRNA display CGI


Results 101 - 120 of 537 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 70621 0.66 0.546195
Target:  5'- cCCCCCGgcccagcaugccaaGCGCCGCgGCGCugagguuCGGCg- -3'
miRNA:   3'- cGGGGGCa-------------UGUGGCGaCGCG-------GCCGau -5'
23566 3' -63 NC_005261.1 + 97117 0.66 0.547159
Target:  5'- gGCCgcggCCGgagGCGCCGCggccacgcucggagGCGCUGGCg- -3'
miRNA:   3'- -CGGg---GGCa--UGUGGCGa-------------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 45260 0.66 0.543305
Target:  5'- cGCCaccaCCGUGCccGCCGCcGUGCugccguacCGGCUGg -3'
miRNA:   3'- -CGGg---GGCAUG--UGGCGaCGCG--------GCCGAU- -5'
23566 3' -63 NC_005261.1 + 58987 0.66 0.543305
Target:  5'- gGCCUCCacggGCGgCGgUGCGCCgGGCUc -3'
miRNA:   3'- -CGGGGGca--UGUgGCgACGCGG-CCGAu -5'
23566 3' -63 NC_005261.1 + 127272 0.66 0.572412
Target:  5'- gGCCgggCCCGccCGCCGCggggGCagcccuccccGCCGGCUGg -3'
miRNA:   3'- -CGG---GGGCauGUGGCGa---CG----------CGGCCGAU- -5'
23566 3' -63 NC_005261.1 + 29327 0.66 0.572412
Target:  5'- cGCCgCCCG---GCCGCgUGCGCuuCGGCg- -3'
miRNA:   3'- -CGG-GGGCaugUGGCG-ACGCG--GCCGau -5'
23566 3' -63 NC_005261.1 + 39456 0.66 0.572412
Target:  5'- aGCCUCCGcGCGgCGCgGCGCCccaacgGGCc- -3'
miRNA:   3'- -CGGGGGCaUGUgGCGaCGCGG------CCGau -5'
23566 3' -63 NC_005261.1 + 43200 0.66 0.552958
Target:  5'- cGgCgCCGaGCGCCGCcgGCGgCGGCUu -3'
miRNA:   3'- -CgGgGGCaUGUGGCGa-CGCgGCCGAu -5'
23566 3' -63 NC_005261.1 + 83361 0.66 0.562662
Target:  5'- cGCCaucauccggCCGUGCGgguucagcCUGCgGCGCCGGCa- -3'
miRNA:   3'- -CGGg--------GGCAUGU--------GGCGaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 101648 0.66 0.569483
Target:  5'- cCCCCCGgugGCCGCgGCGggcccccgcucagcUCGGCUAg -3'
miRNA:   3'- cGGGGGCaugUGGCGaCGC--------------GGCCGAU- -5'
23566 3' -63 NC_005261.1 + 60878 0.66 0.569483
Target:  5'- cGgCCUgGUGCACugCGCUcauggcggggggcgGCGCCGGCg- -3'
miRNA:   3'- -CgGGGgCAUGUG--GCGA--------------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 80011 0.66 0.562662
Target:  5'- cGCCgCCGcgggcGCGCUGCUgGCGCgCGcGCUGa -3'
miRNA:   3'- -CGGgGGCa----UGUGGCGA-CGCG-GC-CGAU- -5'
23566 3' -63 NC_005261.1 + 32417 0.66 0.572412
Target:  5'- cGCCgCCGgcgACGggagccCCGCcggccuggGCGCCGGCa- -3'
miRNA:   3'- -CGGgGGCa--UGU------GGCGa-------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 19537 0.66 0.572412
Target:  5'- gGCCCgCGU-CACCGCcaGCGCCGuGg-- -3'
miRNA:   3'- -CGGGgGCAuGUGGCGa-CGCGGC-Cgau -5'
23566 3' -63 NC_005261.1 + 28431 0.66 0.572412
Target:  5'- aCCCgCGcGCACCGCg--GCCGGCc- -3'
miRNA:   3'- cGGGgGCaUGUGGCGacgCGGCCGau -5'
23566 3' -63 NC_005261.1 + 36702 0.66 0.572412
Target:  5'- gGCCCCCc-GCGCUGac-CGCCGGCc- -3'
miRNA:   3'- -CGGGGGcaUGUGGCgacGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 10094 0.66 0.543305
Target:  5'- aCCCCCGccGCGCCccgGCaGCGgCGGCg- -3'
miRNA:   3'- cGGGGGCa-UGUGG---CGaCGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 135358 0.66 0.562662
Target:  5'- cGCCCCCGaGgGCCGCcGCGUCacCUGg -3'
miRNA:   3'- -CGGGGGCaUgUGGCGaCGCGGccGAU- -5'
23566 3' -63 NC_005261.1 + 73586 0.66 0.562662
Target:  5'- cCCCCCGcgGCggaggcggcgGCCGCgaGCGCgCGGCc- -3'
miRNA:   3'- cGGGGGCa-UG----------UGGCGa-CGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 121404 0.66 0.543305
Target:  5'- uGCCCgaGUGCgACgGCUGCcGCCGccGCUAc -3'
miRNA:   3'- -CGGGggCAUG-UGgCGACG-CGGC--CGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.