miRNA display CGI


Results 81 - 100 of 537 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 14136 0.73 0.229089
Target:  5'- cGgCCCUGUGCGCgCGCUacgcggGCGCCgGGCUGc -3'
miRNA:   3'- -CgGGGGCAUGUG-GCGA------CGCGG-CCGAU- -5'
23566 3' -63 NC_005261.1 + 39893 0.73 0.225872
Target:  5'- cGCCCCCGcgucgacacggggcGCGCCGCgcugGCGgCGGCg- -3'
miRNA:   3'- -CGGGGGCa-------------UGUGGCGa---CGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 137242 0.72 0.24576
Target:  5'- cGCCCCCGUcucCGuCCGCucUGCGCgCGGCc- -3'
miRNA:   3'- -CGGGGGCAu--GU-GGCG--ACGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 51150 0.72 0.263426
Target:  5'- aGCCCCCGgg-GCC-CUGCGgCGGCg- -3'
miRNA:   3'- -CGGGGGCaugUGGcGACGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 78742 0.72 0.257425
Target:  5'- cGCCgCCGcugGCGCgGCggccGCGCCGGCg- -3'
miRNA:   3'- -CGGgGGCa--UGUGgCGa---CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 105735 0.72 0.257425
Target:  5'- cCCCCCGccgAUGCCGCcGuCGCCGGCc- -3'
miRNA:   3'- cGGGGGCa--UGUGGCGaC-GCGGCCGau -5'
23566 3' -63 NC_005261.1 + 3257 0.72 0.263426
Target:  5'- cGgCCCCGUccuCGCCGuCUGCgucGCCGGCg- -3'
miRNA:   3'- -CgGGGGCAu--GUGGC-GACG---CGGCCGau -5'
23566 3' -63 NC_005261.1 + 122140 0.72 0.264032
Target:  5'- cGCCgCCgGUGcCGCCGCguacuucgucuacacGCGCCGGCUc -3'
miRNA:   3'- -CGG-GGgCAU-GUGGCGa--------------CGCGGCCGAu -5'
23566 3' -63 NC_005261.1 + 14931 0.72 0.269539
Target:  5'- gGCCgCUCGUggACAUCGCggagGCGCUGGCg- -3'
miRNA:   3'- -CGG-GGGCA--UGUGGCGa---CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 109037 0.72 0.263426
Target:  5'- cGCCCgCGcggGCGCCGCggcgaggGCGCCGGg-- -3'
miRNA:   3'- -CGGGgGCa--UGUGGCGa------CGCGGCCgau -5'
23566 3' -63 NC_005261.1 + 16397 0.72 0.24576
Target:  5'- gGCgCCgGUGCGCCGCcGCGgCGGCc- -3'
miRNA:   3'- -CGgGGgCAUGUGGCGaCGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 103831 0.72 0.268923
Target:  5'- cGCCaCCCGgucgauaaacuccUGCGCCGCgucUGCGCgCGGCg- -3'
miRNA:   3'- -CGG-GGGC-------------AUGUGGCG---ACGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 1217 0.72 0.257425
Target:  5'- cCCCCCGccgAUGCCGCcGuCGCCGGCc- -3'
miRNA:   3'- cGGGGGCa--UGUGGCGaC-GCGGCCGau -5'
23566 3' -63 NC_005261.1 + 118122 0.72 0.257425
Target:  5'- cGCCgCCGgcucGCGCCGCUcgGCCGGCUc -3'
miRNA:   3'- -CGGgGGCa---UGUGGCGAcgCGGCCGAu -5'
23566 3' -63 NC_005261.1 + 134351 0.72 0.269539
Target:  5'- aGCCCCCGcgcCGCCGCgcggggggcgGCGCC-GCUGg -3'
miRNA:   3'- -CGGGGGCau-GUGGCGa---------CGCGGcCGAU- -5'
23566 3' -63 NC_005261.1 + 4520 0.72 0.263426
Target:  5'- cGCCCgCGcggGCGCCGCggcgaggGCGCCGGg-- -3'
miRNA:   3'- -CGGGgGCa--UGUGGCGa------CGCGGCCgau -5'
23566 3' -63 NC_005261.1 + 32725 0.72 0.24576
Target:  5'- cGCCCCCGUcucCGuCCGCucUGCGCgCGGCc- -3'
miRNA:   3'- -CGGGGGCAu--GU-GGCG--ACGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 131218 0.72 0.257425
Target:  5'- cGCCCgCGUACgugGCCGC-GCGCaucgaGGCUGa -3'
miRNA:   3'- -CGGGgGCAUG---UGGCGaCGCGg----CCGAU- -5'
23566 3' -63 NC_005261.1 + 33082 0.71 0.30726
Target:  5'- cGCCCUCGa--GCCGCgaggaccugcgcGCGCCGGCg- -3'
miRNA:   3'- -CGGGGGCaugUGGCGa-----------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 69555 0.71 0.308631
Target:  5'- gGCCCCC--ACGCgGCgGaCGCCGGCg- -3'
miRNA:   3'- -CGGGGGcaUGUGgCGaC-GCGGCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.