Results 81 - 100 of 537 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23566 | 3' | -63 | NC_005261.1 | + | 111792 | 0.73 | 0.234537 |
Target: 5'- uGCCCCUGgACGCCugGCUcGCGUCGGCc- -3' miRNA: 3'- -CGGGGGCaUGUGG--CGA-CGCGGCCGau -5' |
|||||||
23566 | 3' | -63 | NC_005261.1 | + | 116656 | 0.73 | 0.234537 |
Target: 5'- cGCCCgCCGccgaccUGCuCCGCgGCGCCGGCc- -3' miRNA: 3'- -CGGG-GGC------AUGuGGCGaCGCGGCCGau -5' |
|||||||
23566 | 3' | -63 | NC_005261.1 | + | 16397 | 0.72 | 0.24576 |
Target: 5'- gGCgCCgGUGCGCCGCcGCGgCGGCc- -3' miRNA: 3'- -CGgGGgCAUGUGGCGaCGCgGCCGau -5' |
|||||||
23566 | 3' | -63 | NC_005261.1 | + | 137242 | 0.72 | 0.24576 |
Target: 5'- cGCCCCCGUcucCGuCCGCucUGCGCgCGGCc- -3' miRNA: 3'- -CGGGGGCAu--GU-GGCG--ACGCG-GCCGau -5' |
|||||||
23566 | 3' | -63 | NC_005261.1 | + | 32725 | 0.72 | 0.24576 |
Target: 5'- cGCCCCCGUcucCGuCCGCucUGCGCgCGGCc- -3' miRNA: 3'- -CGGGGGCAu--GU-GGCG--ACGCG-GCCGau -5' |
|||||||
23566 | 3' | -63 | NC_005261.1 | + | 131218 | 0.72 | 0.257425 |
Target: 5'- cGCCCgCGUACgugGCCGC-GCGCaucgaGGCUGa -3' miRNA: 3'- -CGGGgGCAUG---UGGCGaCGCGg----CCGAU- -5' |
|||||||
23566 | 3' | -63 | NC_005261.1 | + | 118122 | 0.72 | 0.257425 |
Target: 5'- cGCCgCCGgcucGCGCCGCUcgGCCGGCUc -3' miRNA: 3'- -CGGgGGCa---UGUGGCGAcgCGGCCGAu -5' |
|||||||
23566 | 3' | -63 | NC_005261.1 | + | 1217 | 0.72 | 0.257425 |
Target: 5'- cCCCCCGccgAUGCCGCcGuCGCCGGCc- -3' miRNA: 3'- cGGGGGCa--UGUGGCGaC-GCGGCCGau -5' |
|||||||
23566 | 3' | -63 | NC_005261.1 | + | 78742 | 0.72 | 0.257425 |
Target: 5'- cGCCgCCGcugGCGCgGCggccGCGCCGGCg- -3' miRNA: 3'- -CGGgGGCa--UGUGgCGa---CGCGGCCGau -5' |
|||||||
23566 | 3' | -63 | NC_005261.1 | + | 105735 | 0.72 | 0.257425 |
Target: 5'- cCCCCCGccgAUGCCGCcGuCGCCGGCc- -3' miRNA: 3'- cGGGGGCa--UGUGGCGaC-GCGGCCGau -5' |
|||||||
23566 | 3' | -63 | NC_005261.1 | + | 109037 | 0.72 | 0.263426 |
Target: 5'- cGCCCgCGcggGCGCCGCggcgaggGCGCCGGg-- -3' miRNA: 3'- -CGGGgGCa--UGUGGCGa------CGCGGCCgau -5' |
|||||||
23566 | 3' | -63 | NC_005261.1 | + | 3257 | 0.72 | 0.263426 |
Target: 5'- cGgCCCCGUccuCGCCGuCUGCgucGCCGGCg- -3' miRNA: 3'- -CgGGGGCAu--GUGGC-GACG---CGGCCGau -5' |
|||||||
23566 | 3' | -63 | NC_005261.1 | + | 51150 | 0.72 | 0.263426 |
Target: 5'- aGCCCCCGgg-GCC-CUGCGgCGGCg- -3' miRNA: 3'- -CGGGGGCaugUGGcGACGCgGCCGau -5' |
|||||||
23566 | 3' | -63 | NC_005261.1 | + | 4520 | 0.72 | 0.263426 |
Target: 5'- cGCCCgCGcggGCGCCGCggcgaggGCGCCGGg-- -3' miRNA: 3'- -CGGGgGCa--UGUGGCGa------CGCGGCCgau -5' |
|||||||
23566 | 3' | -63 | NC_005261.1 | + | 122140 | 0.72 | 0.264032 |
Target: 5'- cGCCgCCgGUGcCGCCGCguacuucgucuacacGCGCCGGCUc -3' miRNA: 3'- -CGG-GGgCAU-GUGGCGa--------------CGCGGCCGAu -5' |
|||||||
23566 | 3' | -63 | NC_005261.1 | + | 103831 | 0.72 | 0.268923 |
Target: 5'- cGCCaCCCGgucgauaaacuccUGCGCCGCgucUGCGCgCGGCg- -3' miRNA: 3'- -CGG-GGGC-------------AUGUGGCG---ACGCG-GCCGau -5' |
|||||||
23566 | 3' | -63 | NC_005261.1 | + | 14931 | 0.72 | 0.269539 |
Target: 5'- gGCCgCUCGUggACAUCGCggagGCGCUGGCg- -3' miRNA: 3'- -CGG-GGGCA--UGUGGCGa---CGCGGCCGau -5' |
|||||||
23566 | 3' | -63 | NC_005261.1 | + | 134351 | 0.72 | 0.269539 |
Target: 5'- aGCCCCCGcgcCGCCGCgcggggggcgGCGCC-GCUGg -3' miRNA: 3'- -CGGGGGCau-GUGGCGa---------CGCGGcCGAU- -5' |
|||||||
23566 | 3' | -63 | NC_005261.1 | + | 10592 | 0.71 | 0.275767 |
Target: 5'- cGCCCCCcgGCGCCGCcGCcgucgcguccgGCCGGCc- -3' miRNA: 3'- -CGGGGGcaUGUGGCGaCG-----------CGGCCGau -5' |
|||||||
23566 | 3' | -63 | NC_005261.1 | + | 101587 | 0.71 | 0.275767 |
Target: 5'- gGCCCCaa-GC-CCGC-GCGCCGGCUu -3' miRNA: 3'- -CGGGGgcaUGuGGCGaCGCGGCCGAu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home