miRNA display CGI


Results 101 - 120 of 537 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 4852 0.71 0.275767
Target:  5'- cGCgCCCGUGgGCCGC-GCGCaGGCa- -3'
miRNA:   3'- -CGgGGGCAUgUGGCGaCGCGgCCGau -5'
23566 3' -63 NC_005261.1 + 10592 0.71 0.275767
Target:  5'- cGCCCCCcgGCGCCGCcGCcgucgcguccgGCCGGCc- -3'
miRNA:   3'- -CGGGGGcaUGUGGCGaCG-----------CGGCCGau -5'
23566 3' -63 NC_005261.1 + 101587 0.71 0.275767
Target:  5'- gGCCCCaa-GC-CCGC-GCGCCGGCUu -3'
miRNA:   3'- -CGGGGgcaUGuGGCGaCGCGGCCGAu -5'
23566 3' -63 NC_005261.1 + 132455 0.71 0.275767
Target:  5'- uGCCCCuCGgcCGCC-CUccGCGCCGGCa- -3'
miRNA:   3'- -CGGGG-GCauGUGGcGA--CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 67655 0.71 0.275767
Target:  5'- gGCCgCCCGUcCGCgCGCgGCGCCaGGCg- -3'
miRNA:   3'- -CGG-GGGCAuGUG-GCGaCGCGG-CCGau -5'
23566 3' -63 NC_005261.1 + 131441 0.71 0.275767
Target:  5'- cGCCCCCcuUGCGCCGCgccuCGCgGGCg- -3'
miRNA:   3'- -CGGGGGc-AUGUGGCGac--GCGgCCGau -5'
23566 3' -63 NC_005261.1 + 109785 0.71 0.275767
Target:  5'- gGCgUCCCGgcCGCUGCUGCgacgGCCGGCg- -3'
miRNA:   3'- -CG-GGGGCauGUGGCGACG----CGGCCGau -5'
23566 3' -63 NC_005261.1 + 49999 0.71 0.282108
Target:  5'- cCCCCCGagccGCGCCGCcagcGCGCgGGCg- -3'
miRNA:   3'- cGGGGGCa---UGUGGCGa---CGCGgCCGau -5'
23566 3' -63 NC_005261.1 + 61021 0.71 0.282108
Target:  5'- cGCCgUCGUggggcgGCACCGCgGCaGCUGGCUGg -3'
miRNA:   3'- -CGGgGGCA------UGUGGCGaCG-CGGCCGAU- -5'
23566 3' -63 NC_005261.1 + 1617 0.71 0.288565
Target:  5'- cGCCCUCGgcgcGCGCgcgccgcuccaCGCUGCGCCgGGCg- -3'
miRNA:   3'- -CGGGGGCa---UGUG-----------GCGACGCGG-CCGau -5'
23566 3' -63 NC_005261.1 + 68721 0.71 0.288565
Target:  5'- gGCCCUC--ACGCgGCggGCGCCGGCg- -3'
miRNA:   3'- -CGGGGGcaUGUGgCGa-CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 15269 0.71 0.288565
Target:  5'- cGCCCCgGcgGCGCCGCcgggGCGCgCGGUc- -3'
miRNA:   3'- -CGGGGgCa-UGUGGCGa---CGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 61102 0.71 0.295138
Target:  5'- gGCCgCCGagauCGCgCGCUGCGCCGuGCg- -3'
miRNA:   3'- -CGGgGGCau--GUG-GCGACGCGGC-CGau -5'
23566 3' -63 NC_005261.1 + 29327 0.71 0.295138
Target:  5'- -aCCCCGcGCcCCGCU-CGCCGGCg- -3'
miRNA:   3'- cgGGGGCaUGuGGCGAcGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 105840 0.71 0.295138
Target:  5'- cGCgCUCCGggACGCCGCcGCGCCGcGCc- -3'
miRNA:   3'- -CG-GGGGCa-UGUGGCGaCGCGGC-CGau -5'
23566 3' -63 NC_005261.1 + 1323 0.71 0.295138
Target:  5'- cGCgCUCCGggACGCCGCcGCGCCGcGCc- -3'
miRNA:   3'- -CG-GGGGCa-UGUGGCGaCGCGGC-CGau -5'
23566 3' -63 NC_005261.1 + 104444 0.71 0.301826
Target:  5'- gGCCCgCGU-CGCCGC--CGCCGGCg- -3'
miRNA:   3'- -CGGGgGCAuGUGGCGacGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 36823 0.71 0.301826
Target:  5'- uGCCCCgGUAUGCgGUgccgGCGCCcgggGGCUAg -3'
miRNA:   3'- -CGGGGgCAUGUGgCGa---CGCGG----CCGAU- -5'
23566 3' -63 NC_005261.1 + 61781 0.71 0.301826
Target:  5'- cGCCgCCGUcgccgucgggcGCGuCCGCcaugGCGCCGGCg- -3'
miRNA:   3'- -CGGgGGCA-----------UGU-GGCGa---CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 82183 0.71 0.301826
Target:  5'- cGCCCCCGaACAUCGCUcGCGCgcgucacgGGCg- -3'
miRNA:   3'- -CGGGGGCaUGUGGCGA-CGCGg-------CCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.