miRNA display CGI


Results 81 - 100 of 537 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 26558 0.66 0.572412
Target:  5'- cGCCgaCGUACGCCGCcaccgcgGCGCgggagGGCUGg -3'
miRNA:   3'- -CGGggGCAUGUGGCGa------CGCGg----CCGAU- -5'
23566 3' -63 NC_005261.1 + 27989 0.68 0.450595
Target:  5'- cCCCCCGgGCGCCGC-GCcGCCcacGCUGg -3'
miRNA:   3'- cGGGGGCaUGUGGCGaCG-CGGc--CGAU- -5'
23566 3' -63 NC_005261.1 + 28174 0.7 0.337014
Target:  5'- cCCCCCGUcucGCugCGCgccgaaGCCGGCg- -3'
miRNA:   3'- cGGGGGCA---UGugGCGacg---CGGCCGau -5'
23566 3' -63 NC_005261.1 + 28357 0.69 0.375097
Target:  5'- cGUCUCCGUAucCACCGaccaGCCGGCUGg -3'
miRNA:   3'- -CGGGGGCAU--GUGGCgacgCGGCCGAU- -5'
23566 3' -63 NC_005261.1 + 28431 0.66 0.572412
Target:  5'- aCCCgCGcGCACCGCg--GCCGGCc- -3'
miRNA:   3'- cGGGgGCaUGUGGCGacgCGGCCGau -5'
23566 3' -63 NC_005261.1 + 28567 0.7 0.35952
Target:  5'- gGCCCgCCGggccgAgGCgCGCgaGCGCCGGCg- -3'
miRNA:   3'- -CGGG-GGCa----UgUG-GCGa-CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 28747 0.67 0.505298
Target:  5'- gGCCCCagaGgACGCCGCggccggggGCGCCugGGCc- -3'
miRNA:   3'- -CGGGGg--CaUGUGGCGa-------CGCGG--CCGau -5'
23566 3' -63 NC_005261.1 + 29189 0.67 0.514699
Target:  5'- cGCCCUCGccGCGgCGCccGCGCgGGCg- -3'
miRNA:   3'- -CGGGGGCa-UGUgGCGa-CGCGgCCGau -5'
23566 3' -63 NC_005261.1 + 29226 0.73 0.229089
Target:  5'- gGCCCgCGcaggcUACGCCGCgGCGCCGcGCg- -3'
miRNA:   3'- -CGGGgGC-----AUGUGGCGaCGCGGC-CGau -5'
23566 3' -63 NC_005261.1 + 29327 0.71 0.295138
Target:  5'- -aCCCCGcGCcCCGCU-CGCCGGCg- -3'
miRNA:   3'- cgGGGGCaUGuGGCGAcGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 29327 0.66 0.572412
Target:  5'- cGCCgCCCG---GCCGCgUGCGCuuCGGCg- -3'
miRNA:   3'- -CGG-GGGCaugUGGCG-ACGCG--GCCGau -5'
23566 3' -63 NC_005261.1 + 29485 0.69 0.375097
Target:  5'- cGCgCCgCGgACGCCGCgGCGCCGccGCUGg -3'
miRNA:   3'- -CGgGG-GCaUGUGGCGaCGCGGC--CGAU- -5'
23566 3' -63 NC_005261.1 + 29790 0.66 0.582201
Target:  5'- gGCCuaCCCGgaggccgGCGCCgGCgGCGCgGGCg- -3'
miRNA:   3'- -CGG--GGGCa------UGUGG-CGaCGCGgCCGau -5'
23566 3' -63 NC_005261.1 + 29846 0.73 0.218513
Target:  5'- uGCgCgCCGUGCucgccgGCCGCgcgGCGCCGGCg- -3'
miRNA:   3'- -CGgG-GGCAUG------UGGCGa--CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 30016 0.66 0.556834
Target:  5'- aGCUCCCgGUGCucucggcugcagcggGCCGCgGCcuGCCGGCc- -3'
miRNA:   3'- -CGGGGG-CAUG---------------UGGCGaCG--CGGCCGau -5'
23566 3' -63 NC_005261.1 + 30172 0.66 0.533707
Target:  5'- cGCCCgCCGcGCugCGCgccgaggcgGcCGCCGcGCUGg -3'
miRNA:   3'- -CGGG-GGCaUGugGCGa--------C-GCGGC-CGAU- -5'
23566 3' -63 NC_005261.1 + 30199 0.66 0.544267
Target:  5'- uGCaCCCGUACuacgcggacgugcuGCCGCUGCuggggcugcccgacgGCgGGCUGg -3'
miRNA:   3'- -CGgGGGCAUG--------------UGGCGACG---------------CGgCCGAU- -5'
23566 3' -63 NC_005261.1 + 30359 0.67 0.483967
Target:  5'- gGCCCugaaggccggcgcgCCGgGCGCCGCgGCGCgGGUg- -3'
miRNA:   3'- -CGGG--------------GGCaUGUGGCGaCGCGgCCGau -5'
23566 3' -63 NC_005261.1 + 30613 0.68 0.424487
Target:  5'- aGUUCCCGcGCACggaCGCUGUGCCcGCUGc -3'
miRNA:   3'- -CGGGGGCaUGUG---GCGACGCGGcCGAU- -5'
23566 3' -63 NC_005261.1 + 30971 0.69 0.375097
Target:  5'- cGCCcgCCCGUGC-CCGC-GCGCCcgcgggugggcGGCUGc -3'
miRNA:   3'- -CGG--GGGCAUGuGGCGaCGCGG-----------CCGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.