miRNA display CGI


Results 101 - 120 of 537 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 31164 0.75 0.159543
Target:  5'- cGCCCgCGcccaGCGCCGCgGCGCUGGCg- -3'
miRNA:   3'- -CGGGgGCa---UGUGGCGaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 31333 0.75 0.167577
Target:  5'- cGCCgCCaGcGCGCCGCUGCGgCGGCg- -3'
miRNA:   3'- -CGGgGG-CaUGUGGCGACGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 31558 0.75 0.163515
Target:  5'- gGCCCUCGgGCGCgCGCUggacgaccGCGCCGGCg- -3'
miRNA:   3'- -CGGGGGCaUGUG-GCGA--------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 31666 0.68 0.415987
Target:  5'- gGCCCCgGggcCGgCGC-GCGCCGGCc- -3'
miRNA:   3'- -CGGGGgCau-GUgGCGaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 31791 0.71 0.301826
Target:  5'- uGCCCgCGgcgcagUGCGCCGC-GCGCUGGCc- -3'
miRNA:   3'- -CGGGgGC------AUGUGGCGaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 31998 0.67 0.495972
Target:  5'- gGUgCCCGUGcCGCCGC-GCGaguaCCGGCa- -3'
miRNA:   3'- -CGgGGGCAU-GUGGCGaCGC----GGCCGau -5'
23566 3' -63 NC_005261.1 + 32149 0.69 0.407592
Target:  5'- gGgCUCgGcGCGCCGCUGCGgCCGGUg- -3'
miRNA:   3'- -CgGGGgCaUGUGGCGACGC-GGCCGau -5'
23566 3' -63 NC_005261.1 + 32181 0.66 0.582201
Target:  5'- gGCCUgCGggcgGCGCgCGCUGgaGCUGGCg- -3'
miRNA:   3'- -CGGGgGCa---UGUG-GCGACg-CGGCCGau -5'
23566 3' -63 NC_005261.1 + 32307 0.75 0.163515
Target:  5'- cGCCCCCGccgcCGCCGCggccgcgGCGCcCGGCg- -3'
miRNA:   3'- -CGGGGGCau--GUGGCGa------CGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 32417 0.66 0.572412
Target:  5'- cGCCgCCGgcgACGggagccCCGCcggccuggGCGCCGGCa- -3'
miRNA:   3'- -CGGgGGCa--UGU------GGCGa-------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 32539 0.66 0.533707
Target:  5'- cGgCCCCGgcCGCgGCgcGgGCCGGCg- -3'
miRNA:   3'- -CgGGGGCauGUGgCGa-CgCGGCCGau -5'
23566 3' -63 NC_005261.1 + 32725 0.72 0.24576
Target:  5'- cGCCCCCGUcucCGuCCGCucUGCGCgCGGCc- -3'
miRNA:   3'- -CGGGGGCAu--GU-GGCG--ACGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 33082 0.71 0.30726
Target:  5'- cGCCCUCGa--GCCGCgaggaccugcgcGCGCCGGCg- -3'
miRNA:   3'- -CGGGGGCaugUGGCGa-----------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 33230 0.66 0.533707
Target:  5'- gGCgCCCCGacCGCCGCccgcgcuggGCGCCGGg-- -3'
miRNA:   3'- -CG-GGGGCauGUGGCGa--------CGCGGCCgau -5'
23566 3' -63 NC_005261.1 + 33412 0.7 0.337014
Target:  5'- gGCCCCgCG-ACGCCGCUGCGgagcgggaCCcGCUGg -3'
miRNA:   3'- -CGGGG-GCaUGUGGCGACGC--------GGcCGAU- -5'
23566 3' -63 NC_005261.1 + 33584 0.75 0.151858
Target:  5'- aGCCCCgCGaGCACCagggGCgGCGCCGGCg- -3'
miRNA:   3'- -CGGGG-GCaUGUGG----CGaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 34279 0.66 0.552958
Target:  5'- gGCCgCCGcggucGCGCCGCUGCagcguCUGGCa- -3'
miRNA:   3'- -CGGgGGCa----UGUGGCGACGc----GGCCGau -5'
23566 3' -63 NC_005261.1 + 34353 0.67 0.514699
Target:  5'- gGCCgacggggCCGgGCGCCGCgcgGCGCCGcGCg- -3'
miRNA:   3'- -CGGg------GGCaUGUGGCGa--CGCGGC-CGau -5'
23566 3' -63 NC_005261.1 + 34356 0.66 0.552958
Target:  5'- cGCCgCCCGgcgGCGCCGCccCGCCgccgccgcGGCUc -3'
miRNA:   3'- -CGG-GGGCa--UGUGGCGacGCGG--------CCGAu -5'
23566 3' -63 NC_005261.1 + 34729 0.67 0.486725
Target:  5'- cGCCgCCGUccgcgGCGCCGacgacgucUUGCGCCaGCUGg -3'
miRNA:   3'- -CGGgGGCA-----UGUGGC--------GACGCGGcCGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.