miRNA display CGI


Results 81 - 100 of 537 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 117656 0.66 0.572412
Target:  5'- cCCCCCGcuaaGCGCCccGCcGCGCCcGGCc- -3'
miRNA:   3'- cGGGGGCa---UGUGG--CGaCGCGG-CCGau -5'
23566 3' -63 NC_005261.1 + 117400 0.66 0.543305
Target:  5'- uGCCCCCGcgaacGCGCaguucaGCUGCGCguaaaccaGGCg- -3'
miRNA:   3'- -CGGGGGCa----UGUGg-----CGACGCGg-------CCGau -5'
23566 3' -63 NC_005261.1 + 116656 0.73 0.234537
Target:  5'- cGCCCgCCGccgaccUGCuCCGCgGCGCCGGCc- -3'
miRNA:   3'- -CGGG-GGC------AUGuGGCGaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 116180 0.69 0.399304
Target:  5'- cGUCCCCG-ACGCCGCUgggcGCGUCGccGCa- -3'
miRNA:   3'- -CGGGGGCaUGUGGCGA----CGCGGC--CGau -5'
23566 3' -63 NC_005261.1 + 115896 0.66 0.52417
Target:  5'- cGCCUCCucccCGCCGUcgucaGCGCCGGCc- -3'
miRNA:   3'- -CGGGGGcau-GUGGCGa----CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 115681 0.7 0.351903
Target:  5'- cUCCCCGUAucuCGCCGCgGCcCCGGCc- -3'
miRNA:   3'- cGGGGGCAU---GUGGCGaCGcGGCCGau -5'
23566 3' -63 NC_005261.1 + 115558 0.67 0.468481
Target:  5'- uCCCCCGgcggcacucggGCGCCGCccagGCGCCGccaGCg- -3'
miRNA:   3'- cGGGGGCa----------UGUGGCGa---CGCGGC---CGau -5'
23566 3' -63 NC_005261.1 + 115511 0.7 0.337014
Target:  5'- aGCCCCCGcacCACCuGCUGCaCCGaGCg- -3'
miRNA:   3'- -CGGGGGCau-GUGG-CGACGcGGC-CGau -5'
23566 3' -63 NC_005261.1 + 115042 0.67 0.468481
Target:  5'- gGCCCCgCGgcGCGCuCGCUGuCGCCcccGGCg- -3'
miRNA:   3'- -CGGGG-GCa-UGUG-GCGAC-GCGG---CCGau -5'
23566 3' -63 NC_005261.1 + 114999 0.67 0.47756
Target:  5'- gGCCggCCCGcUGCACCGgcuuUUGCGCgCGGCc- -3'
miRNA:   3'- -CGG--GGGC-AUGUGGC----GACGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 114612 0.66 0.543305
Target:  5'- aCCCCCGccGCGCCccgGCaGCGgCGGCg- -3'
miRNA:   3'- cGGGGGCa-UGUGG---CGaCGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 113126 0.69 0.399304
Target:  5'- uGCUCUCGccCGCCGC-GCGgCGGCUGa -3'
miRNA:   3'- -CGGGGGCauGUGGCGaCGCgGCCGAU- -5'
23566 3' -63 NC_005261.1 + 112848 0.68 0.459491
Target:  5'- uCCCCCG-AC-CCGC-GCGCCGuGCc- -3'
miRNA:   3'- cGGGGGCaUGuGGCGaCGCGGC-CGau -5'
23566 3' -63 NC_005261.1 + 111792 0.73 0.234537
Target:  5'- uGCCCCUGgACGCCugGCUcGCGUCGGCc- -3'
miRNA:   3'- -CGGGGGCaUGUGG--CGA-CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 111661 0.7 0.337014
Target:  5'- aGCCCUCccGCGCCGCgGUGgCGGCg- -3'
miRNA:   3'- -CGGGGGcaUGUGGCGaCGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 111310 0.67 0.468481
Target:  5'- uGCCUCCGccgcCGCCGC-GCGCuCGGUUu -3'
miRNA:   3'- -CGGGGGCau--GUGGCGaCGCG-GCCGAu -5'
23566 3' -63 NC_005261.1 + 110914 0.67 0.505298
Target:  5'- cGCCCCCuugAC-CCGCgcGCGuuGGCc- -3'
miRNA:   3'- -CGGGGGca-UGuGGCGa-CGCggCCGau -5'
23566 3' -63 NC_005261.1 + 109991 0.69 0.367252
Target:  5'- aGCCCCCGc-UAUCGCgcGCGCCGGg-- -3'
miRNA:   3'- -CGGGGGCauGUGGCGa-CGCGGCCgau -5'
23566 3' -63 NC_005261.1 + 109785 0.71 0.275767
Target:  5'- gGCgUCCCGgcCGCUGCUGCgacgGCCGGCg- -3'
miRNA:   3'- -CG-GGGGCauGUGGCGACG----CGGCCGau -5'
23566 3' -63 NC_005261.1 + 109037 0.72 0.263426
Target:  5'- cGCCCgCGcggGCGCCGCggcgaggGCGCCGGg-- -3'
miRNA:   3'- -CGGGgGCa--UGUGGCGa------CGCGGCCgau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.