miRNA display CGI


Results 101 - 120 of 537 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 1617 0.71 0.288565
Target:  5'- cGCCCUCGgcgcGCGCgcgccgcuccaCGCUGCGCCgGGCg- -3'
miRNA:   3'- -CGGGGGCa---UGUG-----------GCGACGCGG-CCGau -5'
23566 3' -63 NC_005261.1 + 29327 0.71 0.295138
Target:  5'- -aCCCCGcGCcCCGCU-CGCCGGCg- -3'
miRNA:   3'- cgGGGGCaUGuGGCGAcGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 105840 0.71 0.295138
Target:  5'- cGCgCUCCGggACGCCGCcGCGCCGcGCc- -3'
miRNA:   3'- -CG-GGGGCa-UGUGGCGaCGCGGC-CGau -5'
23566 3' -63 NC_005261.1 + 51373 0.71 0.301826
Target:  5'- cGCgCCCG-GCGgCGUUgaGCGCCGGCUGg -3'
miRNA:   3'- -CGgGGGCaUGUgGCGA--CGCGGCCGAU- -5'
23566 3' -63 NC_005261.1 + 61781 0.71 0.301826
Target:  5'- cGCCgCCGUcgccgucgggcGCGuCCGCcaugGCGCCGGCg- -3'
miRNA:   3'- -CGGgGGCA-----------UGU-GGCGa---CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 3257 0.72 0.263426
Target:  5'- cGgCCCCGUccuCGCCGuCUGCgucGCCGGCg- -3'
miRNA:   3'- -CgGGGGCAu--GUGGC-GACG---CGGCCGau -5'
23566 3' -63 NC_005261.1 + 105735 0.72 0.257425
Target:  5'- cCCCCCGccgAUGCCGCcGuCGCCGGCc- -3'
miRNA:   3'- cGGGGGCa--UGUGGCGaC-GCGGCCGau -5'
23566 3' -63 NC_005261.1 + 108818 0.73 0.213383
Target:  5'- gGCCCCgCGgcCGCCGCguaGCGCgCGGCc- -3'
miRNA:   3'- -CGGGG-GCauGUGGCGa--CGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 44178 0.73 0.218513
Target:  5'- uGCUCCCG-GCGCCGCUgggggggcGCGCCGGg-- -3'
miRNA:   3'- -CGGGGGCaUGUGGCGA--------CGCGGCCgau -5'
23566 3' -63 NC_005261.1 + 134363 0.73 0.218513
Target:  5'- uGCgCgCCGUGCucgccgGCCGCgcgGCGCCGGCg- -3'
miRNA:   3'- -CGgG-GGCAUG------UGGCGa--CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 84236 0.73 0.223748
Target:  5'- gGCgCCUGUGCGCCGC-GCGCUGGa-- -3'
miRNA:   3'- -CGgGGGCAUGUGGCGaCGCGGCCgau -5'
23566 3' -63 NC_005261.1 + 39893 0.73 0.225872
Target:  5'- cGCCCCCGcgucgacacggggcGCGCCGCgcugGCGgCGGCg- -3'
miRNA:   3'- -CGGGGGCa-------------UGUGGCGa---CGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 14136 0.73 0.229089
Target:  5'- cGgCCCUGUGCGCgCGCUacgcggGCGCCgGGCUGc -3'
miRNA:   3'- -CgGGGGCAUGUG-GCGA------CGCGG-CCGAU- -5'
23566 3' -63 NC_005261.1 + 100751 0.73 0.229089
Target:  5'- gGCCaaguCCCGaUACGCCGggGUGCCGGCg- -3'
miRNA:   3'- -CGG----GGGC-AUGUGGCgaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 108428 0.73 0.229089
Target:  5'- gGCgCCC--GCGCCGCcgGCGCCGGCc- -3'
miRNA:   3'- -CGgGGGcaUGUGGCGa-CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 133743 0.73 0.229089
Target:  5'- gGCCCgCGcaggcUACGCCGCgGCGCCGcGCg- -3'
miRNA:   3'- -CGGGgGC-----AUGUGGCGaCGCGGC-CGau -5'
23566 3' -63 NC_005261.1 + 94831 0.73 0.229089
Target:  5'- cGCCCCCG-GCGCCuggacgGUGCCGGCa- -3'
miRNA:   3'- -CGGGGGCaUGUGGcga---CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 16397 0.72 0.24576
Target:  5'- gGCgCCgGUGCGCCGCcGCGgCGGCc- -3'
miRNA:   3'- -CGgGGgCAUGUGGCGaCGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 137242 0.72 0.24576
Target:  5'- cGCCCCCGUcucCGuCCGCucUGCGCgCGGCc- -3'
miRNA:   3'- -CGGGGGCAu--GU-GGCG--ACGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 78742 0.72 0.257425
Target:  5'- cGCCgCCGcugGCGCgGCggccGCGCCGGCg- -3'
miRNA:   3'- -CGGgGGCa--UGUGgCGa---CGCGGCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.