miRNA display CGI


Results 121 - 140 of 537 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 105769 0.7 0.322589
Target:  5'- aGCCCgaguCCGUGC-CCGgggugaCUGUGCCGGCg- -3'
miRNA:   3'- -CGGG----GGCAUGuGGC------GACGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 107298 0.7 0.322589
Target:  5'- cGCCCCCGagGgGCUGC--CGCCGGCg- -3'
miRNA:   3'- -CGGGGGCa-UgUGGCGacGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 101587 0.71 0.275767
Target:  5'- gGCCCCaa-GC-CCGC-GCGCCGGCUu -3'
miRNA:   3'- -CGGGGgcaUGuGGCGaCGCGGCCGAu -5'
23566 3' -63 NC_005261.1 + 10592 0.71 0.275767
Target:  5'- cGCCCCCcgGCGCCGCcGCcgucgcguccgGCCGGCc- -3'
miRNA:   3'- -CGGGGGcaUGUGGCGaCG-----------CGGCCGau -5'
23566 3' -63 NC_005261.1 + 4852 0.71 0.275767
Target:  5'- cGCgCCCGUGgGCCGC-GCGCaGGCa- -3'
miRNA:   3'- -CGgGGGCAUgUGGCGaCGCGgCCGau -5'
23566 3' -63 NC_005261.1 + 100751 0.73 0.229089
Target:  5'- gGCCaaguCCCGaUACGCCGggGUGCCGGCg- -3'
miRNA:   3'- -CGG----GGGC-AUGUGGCgaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 108428 0.73 0.229089
Target:  5'- gGCgCCC--GCGCCGCcgGCGCCGGCc- -3'
miRNA:   3'- -CGgGGGcaUGUGGCGa-CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 133743 0.73 0.229089
Target:  5'- gGCCCgCGcaggcUACGCCGCgGCGCCGcGCg- -3'
miRNA:   3'- -CGGGgGC-----AUGUGGCGaCGCGGC-CGau -5'
23566 3' -63 NC_005261.1 + 94831 0.73 0.229089
Target:  5'- cGCCCCCG-GCGCCuggacgGUGCCGGCa- -3'
miRNA:   3'- -CGGGGGCaUGUGGcga---CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 16397 0.72 0.24576
Target:  5'- gGCgCCgGUGCGCCGCcGCGgCGGCc- -3'
miRNA:   3'- -CGgGGgCAUGUGGCGaCGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 137242 0.72 0.24576
Target:  5'- cGCCCCCGUcucCGuCCGCucUGCGCgCGGCc- -3'
miRNA:   3'- -CGGGGGCAu--GU-GGCG--ACGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 78742 0.72 0.257425
Target:  5'- cGCCgCCGcugGCGCgGCggccGCGCCGGCg- -3'
miRNA:   3'- -CGGgGGCa--UGUGgCGa---CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 117664 0.7 0.329743
Target:  5'- cGCCgCCG-GCGCCGCUGCGCa-GCc- -3'
miRNA:   3'- -CGGgGGCaUGUGGCGACGCGgcCGau -5'
23566 3' -63 NC_005261.1 + 105735 0.72 0.257425
Target:  5'- cCCCCCGccgAUGCCGCcGuCGCCGGCc- -3'
miRNA:   3'- cGGGGGCa--UGUGGCGaC-GCGGCCGau -5'
23566 3' -63 NC_005261.1 + 3257 0.72 0.263426
Target:  5'- cGgCCCCGUccuCGCCGuCUGCgucGCCGGCg- -3'
miRNA:   3'- -CgGGGGCAu--GUGGC-GACG---CGGCCGau -5'
23566 3' -63 NC_005261.1 + 109037 0.72 0.263426
Target:  5'- cGCCCgCGcggGCGCCGCggcgaggGCGCCGGg-- -3'
miRNA:   3'- -CGGGgGCa--UGUGGCGa------CGCGGCCgau -5'
23566 3' -63 NC_005261.1 + 122140 0.72 0.264032
Target:  5'- cGCCgCCgGUGcCGCCGCguacuucgucuacacGCGCCGGCUc -3'
miRNA:   3'- -CGG-GGgCAU-GUGGCGa--------------CGCGGCCGAu -5'
23566 3' -63 NC_005261.1 + 103831 0.72 0.268923
Target:  5'- cGCCaCCCGgucgauaaacuccUGCGCCGCgucUGCGCgCGGCg- -3'
miRNA:   3'- -CGG-GGGC-------------AUGUGGCG---ACGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 14931 0.72 0.269539
Target:  5'- gGCCgCUCGUggACAUCGCggagGCGCUGGCg- -3'
miRNA:   3'- -CGG-GGGCA--UGUGGCGa---CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 5324 0.71 0.275767
Target:  5'- aGCCgCCGcucgGCGCCGCccgcgGCGCCcGGCUu -3'
miRNA:   3'- -CGGgGGCa---UGUGGCGa----CGCGG-CCGAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.