miRNA display CGI


Results 61 - 80 of 537 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 61611 0.66 0.552958
Target:  5'- cGCCCaCCG-ACAgcgccuucgccCCGCUGgccgcccgucCGCCGGCg- -3'
miRNA:   3'- -CGGG-GGCaUGU-----------GGCGAC----------GCGGCCGau -5'
23566 3' -63 NC_005261.1 + 97117 0.66 0.547159
Target:  5'- gGCCgcggCCGgagGCGCCGCggccacgcucggagGCGCUGGCg- -3'
miRNA:   3'- -CGGg---GGCa--UGUGGCGa-------------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 35662 0.66 0.582201
Target:  5'- cGCUCCCGcucccUGCcgGCCGCaccccCGCCGGCg- -3'
miRNA:   3'- -CGGGGGC-----AUG--UGGCGac---GCGGCCGau -5'
23566 3' -63 NC_005261.1 + 103373 0.66 0.582201
Target:  5'- aGCUCggCCGcGCGCCGCcGCGCCgcGGCc- -3'
miRNA:   3'- -CGGG--GGCaUGUGGCGaCGCGG--CCGau -5'
23566 3' -63 NC_005261.1 + 69964 0.66 0.582201
Target:  5'- gGCCUCCGgGCGCgCGCUagaaCGCCGGg-- -3'
miRNA:   3'- -CGGGGGCaUGUG-GCGAc---GCGGCCgau -5'
23566 3' -63 NC_005261.1 + 127272 0.66 0.572412
Target:  5'- gGCCgggCCCGccCGCCGCggggGCagcccuccccGCCGGCUGg -3'
miRNA:   3'- -CGG---GGGCauGUGGCGa---CG----------CGGCCGAU- -5'
23566 3' -63 NC_005261.1 + 91699 0.66 0.572412
Target:  5'- cGCCUgCG-ACAgCCgGCUGCaagGCCGGCUc -3'
miRNA:   3'- -CGGGgGCaUGU-GG-CGACG---CGGCCGAu -5'
23566 3' -63 NC_005261.1 + 28431 0.66 0.572412
Target:  5'- aCCCgCGcGCACCGCg--GCCGGCc- -3'
miRNA:   3'- cGGGgGCaUGUGGCGacgCGGCCGau -5'
23566 3' -63 NC_005261.1 + 73586 0.66 0.562662
Target:  5'- cCCCCCGcgGCggaggcggcgGCCGCgaGCGCgCGGCc- -3'
miRNA:   3'- cGGGGGCa-UG----------UGGCGa-CGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 104165 0.66 0.562662
Target:  5'- cGCCgUCCGcggGCGCCGC-GCGCgGGUc- -3'
miRNA:   3'- -CGG-GGGCa--UGUGGCGaCGCGgCCGau -5'
23566 3' -63 NC_005261.1 + 134874 0.67 0.514699
Target:  5'- cGCCCCCGcggGCcCCuGCUGUGCguuCGGUg- -3'
miRNA:   3'- -CGGGGGCa--UGuGG-CGACGCG---GCCGau -5'
23566 3' -63 NC_005261.1 + 34353 0.67 0.514699
Target:  5'- gGCCgacggggCCGgGCGCCGCgcgGCGCCGcGCg- -3'
miRNA:   3'- -CGGg------GGCaUGUGGCGa--CGCGGC-CGau -5'
23566 3' -63 NC_005261.1 + 121404 0.66 0.543305
Target:  5'- uGCCCgaGUGCgACgGCUGCcGCCGccGCUAc -3'
miRNA:   3'- -CGGGggCAUG-UGgCGACG-CGGC--CGAU- -5'
23566 3' -63 NC_005261.1 + 58987 0.66 0.543305
Target:  5'- gGCCUCCacggGCGgCGgUGCGCCgGGCUc -3'
miRNA:   3'- -CGGGGGca--UGUgGCgACGCGG-CCGAu -5'
23566 3' -63 NC_005261.1 + 68754 0.66 0.533707
Target:  5'- cGCCCgCCGggGCGCCGCggaGCcGCCGuGUc- -3'
miRNA:   3'- -CGGG-GGCa-UGUGGCGa--CG-CGGC-CGau -5'
23566 3' -63 NC_005261.1 + 14967 0.66 0.533707
Target:  5'- cGUgCCUGgggcgACugCGCggccGCGCCGGCc- -3'
miRNA:   3'- -CGgGGGCa----UGugGCGa---CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 62276 0.66 0.530839
Target:  5'- cGCCCgUUGUgguacaucacgucgGCGCCGCgcggGCGCgCGGCg- -3'
miRNA:   3'- -CGGG-GGCA--------------UGUGGCGa---CGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 52051 0.66 0.52417
Target:  5'- cGCCCgCCGcuccUACCGCUGaGaCCGGCg- -3'
miRNA:   3'- -CGGG-GGCau--GUGGCGACgC-GGCCGau -5'
23566 3' -63 NC_005261.1 + 77453 0.66 0.52417
Target:  5'- aGCCaggCCCGggGCGCgGCUGCaGCCGcGCc- -3'
miRNA:   3'- -CGG---GGGCa-UGUGgCGACG-CGGC-CGau -5'
23566 3' -63 NC_005261.1 + 121607 0.66 0.52417
Target:  5'- cGUUCUCGUACACCGCcGCcucccgccGCuCGGCg- -3'
miRNA:   3'- -CGGGGGCAUGUGGCGaCG--------CG-GCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.