miRNA display CGI


Results 81 - 100 of 537 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 10094 0.66 0.543305
Target:  5'- aCCCCCGccGCGCCccgGCaGCGgCGGCg- -3'
miRNA:   3'- cGGGGGCa-UGUGG---CGaCGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 94444 0.66 0.533707
Target:  5'- cUCCCCGUccGCGuCCGCgucccccuccGCGUCGGCg- -3'
miRNA:   3'- cGGGGGCA--UGU-GGCGa---------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 42791 0.66 0.533707
Target:  5'- cGCUCCauaaccgagCGUGCAgacguCCGCggccGCGCCGGCc- -3'
miRNA:   3'- -CGGGG---------GCAUGU-----GGCGa---CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 1300 0.66 0.533707
Target:  5'- gGCUCCCGU-CGCCG--GCGgCGGCa- -3'
miRNA:   3'- -CGGGGGCAuGUGGCgaCGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 87928 0.66 0.527977
Target:  5'- cGCCaCCCGgggccuggagccgcGCGCCGCcacgGCccGCCGGCg- -3'
miRNA:   3'- -CGG-GGGCa-------------UGUGGCGa---CG--CGGCCGau -5'
23566 3' -63 NC_005261.1 + 77453 0.66 0.52417
Target:  5'- aGCCaggCCCGggGCGCgGCUGCaGCCGcGCc- -3'
miRNA:   3'- -CGG---GGGCa-UGUGgCGACG-CGGC-CGau -5'
23566 3' -63 NC_005261.1 + 121607 0.66 0.52417
Target:  5'- cGUUCUCGUACACCGCcGCcucccgccGCuCGGCg- -3'
miRNA:   3'- -CGGGGGCAUGUGGCGaCG--------CG-GCCGau -5'
23566 3' -63 NC_005261.1 + 104165 0.66 0.562662
Target:  5'- cGCCgUCCGcggGCGCCGC-GCGCgGGUc- -3'
miRNA:   3'- -CGG-GGGCa--UGUGGCGaCGCGgCCGau -5'
23566 3' -63 NC_005261.1 + 73586 0.66 0.562662
Target:  5'- cCCCCCGcgGCggaggcggcgGCCGCgaGCGCgCGGCc- -3'
miRNA:   3'- cGGGGGCa-UG----------UGGCGa-CGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 28431 0.66 0.572412
Target:  5'- aCCCgCGcGCACCGCg--GCCGGCc- -3'
miRNA:   3'- cGGGgGCaUGUGGCGacgCGGCCGau -5'
23566 3' -63 NC_005261.1 + 103796 0.67 0.514699
Target:  5'- cGUCUUCGgugUGCGCCGUUGCGCCcGCc- -3'
miRNA:   3'- -CGGGGGC---AUGUGGCGACGCGGcCGau -5'
23566 3' -63 NC_005261.1 + 6397 0.67 0.505298
Target:  5'- cGCCCCCuugAC-CCGCgcGCGuuGGCc- -3'
miRNA:   3'- -CGGGGGca-UGuGGCGa-CGCggCCGau -5'
23566 3' -63 NC_005261.1 + 51499 0.67 0.505298
Target:  5'- cGCCCCUGaUGCucgGCCagauGCUggGCGCCgGGCUGg -3'
miRNA:   3'- -CGGGGGC-AUG---UGG----CGA--CGCGG-CCGAU- -5'
23566 3' -63 NC_005261.1 + 43385 0.67 0.505298
Target:  5'- gGCCUCgCGgugccgGCACCGUccagGCGCCGGg-- -3'
miRNA:   3'- -CGGGG-GCa-----UGUGGCGa---CGCGGCCgau -5'
23566 3' -63 NC_005261.1 + 62675 0.67 0.495972
Target:  5'- aGCgCCaCGUcCGCCaGCUgcacGCGCCGGCg- -3'
miRNA:   3'- -CGgGG-GCAuGUGG-CGA----CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 35662 0.66 0.582201
Target:  5'- cGCUCCCGcucccUGCcgGCCGCaccccCGCCGGCg- -3'
miRNA:   3'- -CGGGGGC-----AUG--UGGCGac---GCGGCCGau -5'
23566 3' -63 NC_005261.1 + 103373 0.66 0.582201
Target:  5'- aGCUCggCCGcGCGCCGCcGCGCCgcGGCc- -3'
miRNA:   3'- -CGGG--GGCaUGUGGCGaCGCGG--CCGau -5'
23566 3' -63 NC_005261.1 + 69964 0.66 0.582201
Target:  5'- gGCCUCCGgGCGCgCGCUagaaCGCCGGg-- -3'
miRNA:   3'- -CGGGGGCaUGUG-GCGAc---GCGGCCgau -5'
23566 3' -63 NC_005261.1 + 127272 0.66 0.572412
Target:  5'- gGCCgggCCCGccCGCCGCggggGCagcccuccccGCCGGCUGg -3'
miRNA:   3'- -CGG---GGGCauGUGGCGa---CG----------CGGCCGAU- -5'
23566 3' -63 NC_005261.1 + 91699 0.66 0.572412
Target:  5'- cGCCUgCG-ACAgCCgGCUGCaagGCCGGCUc -3'
miRNA:   3'- -CGGGgGCaUGU-GG-CGACG---CGGCCGAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.