miRNA display CGI


Results 101 - 120 of 537 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 16730 0.67 0.505298
Target:  5'- gGCCCUCGgcgaGCCGCgcggGCGCCGcCa- -3'
miRNA:   3'- -CGGGGGCaug-UGGCGa---CGCGGCcGau -5'
23566 3' -63 NC_005261.1 + 31998 0.67 0.495972
Target:  5'- gGUgCCCGUGcCGCCGC-GCGaguaCCGGCa- -3'
miRNA:   3'- -CGgGGGCAU-GUGGCGaCGC----GGCCGau -5'
23566 3' -63 NC_005261.1 + 72036 0.67 0.486725
Target:  5'- cGCCCCCGggaagUACCagucCUGCaaggGCCGGCUc -3'
miRNA:   3'- -CGGGGGCau---GUGGc---GACG----CGGCCGAu -5'
23566 3' -63 NC_005261.1 + 124091 0.67 0.47756
Target:  5'- cGCCCgCGUaGCGCgCGCacaGgGCCGGCa- -3'
miRNA:   3'- -CGGGgGCA-UGUG-GCGa--CgCGGCCGau -5'
23566 3' -63 NC_005261.1 + 70071 0.67 0.47756
Target:  5'- aGCgCCCCGgcCACCGaaGCccagacguacGCCGGCg- -3'
miRNA:   3'- -CG-GGGGCauGUGGCgaCG----------CGGCCGau -5'
23566 3' -63 NC_005261.1 + 1300 0.66 0.533707
Target:  5'- gGCUCCCGU-CGCCG--GCGgCGGCa- -3'
miRNA:   3'- -CGGGGGCAuGUGGCgaCGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 42791 0.66 0.533707
Target:  5'- cGCUCCauaaccgagCGUGCAgacguCCGCggccGCGCCGGCc- -3'
miRNA:   3'- -CGGGG---------GCAUGU-----GGCGa---CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 35662 0.66 0.582201
Target:  5'- cGCUCCCGcucccUGCcgGCCGCaccccCGCCGGCg- -3'
miRNA:   3'- -CGGGGGC-----AUG--UGGCGac---GCGGCCGau -5'
23566 3' -63 NC_005261.1 + 103373 0.66 0.582201
Target:  5'- aGCUCggCCGcGCGCCGCcGCGCCgcGGCc- -3'
miRNA:   3'- -CGGG--GGCaUGUGGCGaCGCGG--CCGau -5'
23566 3' -63 NC_005261.1 + 69964 0.66 0.582201
Target:  5'- gGCCUCCGgGCGCgCGCUagaaCGCCGGg-- -3'
miRNA:   3'- -CGGGGGCaUGUG-GCGAc---GCGGCCgau -5'
23566 3' -63 NC_005261.1 + 127272 0.66 0.572412
Target:  5'- gGCCgggCCCGccCGCCGCggggGCagcccuccccGCCGGCUGg -3'
miRNA:   3'- -CGG---GGGCauGUGGCGa---CG----------CGGCCGAU- -5'
23566 3' -63 NC_005261.1 + 91699 0.66 0.572412
Target:  5'- cGCCUgCG-ACAgCCgGCUGCaagGCCGGCUc -3'
miRNA:   3'- -CGGGgGCaUGU-GG-CGACG---CGGCCGAu -5'
23566 3' -63 NC_005261.1 + 28431 0.66 0.572412
Target:  5'- aCCCgCGcGCACCGCg--GCCGGCc- -3'
miRNA:   3'- cGGGgGCaUGUGGCGacgCGGCCGau -5'
23566 3' -63 NC_005261.1 + 73586 0.66 0.562662
Target:  5'- cCCCCCGcgGCggaggcggcgGCCGCgaGCGCgCGGCc- -3'
miRNA:   3'- cGGGGGCa-UG----------UGGCGa-CGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 104165 0.66 0.562662
Target:  5'- cGCCgUCCGcggGCGCCGC-GCGCgGGUc- -3'
miRNA:   3'- -CGG-GGGCa--UGUGGCGaCGCGgCCGau -5'
23566 3' -63 NC_005261.1 + 90864 0.66 0.552958
Target:  5'- uGCCCUacgACGCCGuCUGCGCgcugggcgaCGGCa- -3'
miRNA:   3'- -CGGGGgcaUGUGGC-GACGCG---------GCCGau -5'
23566 3' -63 NC_005261.1 + 4127 0.66 0.551023
Target:  5'- uGgCCCCGgcagcccugcacGCGCCGCUGCaGCaGGCg- -3'
miRNA:   3'- -CgGGGGCa-----------UGUGGCGACG-CGgCCGau -5'
23566 3' -63 NC_005261.1 + 45260 0.66 0.543305
Target:  5'- cGCCaccaCCGUGCccGCCGCcGUGCugccguacCGGCUGg -3'
miRNA:   3'- -CGGg---GGCAUG--UGGCGaCGCG--------GCCGAU- -5'
23566 3' -63 NC_005261.1 + 10094 0.66 0.543305
Target:  5'- aCCCCCGccGCGCCccgGCaGCGgCGGCg- -3'
miRNA:   3'- cGGGGGCa-UGUGG---CGaCGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 94444 0.66 0.533707
Target:  5'- cUCCCCGUccGCGuCCGCgucccccuccGCGUCGGCg- -3'
miRNA:   3'- cGGGGGCA--UGU-GGCGa---------CGCGGCCGau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.