miRNA display CGI


Results 1 - 20 of 537 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 104348 0.66 0.52417
Target:  5'- cGCCCCgGUgacGCGCCGgaG-GCgGGCg- -3'
miRNA:   3'- -CGGGGgCA---UGUGGCgaCgCGgCCGau -5'
23566 3' -63 NC_005261.1 + 22833 0.66 0.52417
Target:  5'- cGCCCgCGgucgACGacCCGCUGaagaccacgaCGCCGGCa- -3'
miRNA:   3'- -CGGGgGCa---UGU--GGCGAC----------GCGGCCGau -5'
23566 3' -63 NC_005261.1 + 21856 0.66 0.52417
Target:  5'- cCCCCCGaucgGCAUUGCgcGCGgCGGCa- -3'
miRNA:   3'- cGGGGGCa---UGUGGCGa-CGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 53932 0.66 0.52417
Target:  5'- cGCCUUCG-GCGCCGCcggggccgggGcCGCCGGCg- -3'
miRNA:   3'- -CGGGGGCaUGUGGCGa---------C-GCGGCCGau -5'
23566 3' -63 NC_005261.1 + 72883 0.66 0.530839
Target:  5'- uGCCCCgCGUcaucaACggcaacaucccgguGCCGCUGUGcCCGGUg- -3'
miRNA:   3'- -CGGGG-GCA-----UG--------------UGGCGACGC-GGCCGau -5'
23566 3' -63 NC_005261.1 + 121929 0.66 0.533707
Target:  5'- --gCCCGgcCGCCGCUGgGCCcgacGGCg- -3'
miRNA:   3'- cggGGGCauGUGGCGACgCGG----CCGau -5'
23566 3' -63 NC_005261.1 + 105817 0.66 0.533707
Target:  5'- gGCUCCCGU-CGCCG--GCGgCGGCa- -3'
miRNA:   3'- -CGGGGGCAuGUGGCgaCGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 63474 0.66 0.533707
Target:  5'- cGCgCCUGUggcGCGCUGCcGCGCCaGCa- -3'
miRNA:   3'- -CGgGGGCA---UGUGGCGaCGCGGcCGau -5'
23566 3' -63 NC_005261.1 + 99742 0.66 0.533707
Target:  5'- cGCUCCaGUcgACGCCGCcGCGgCCGuGCUGc -3'
miRNA:   3'- -CGGGGgCA--UGUGGCGaCGC-GGC-CGAU- -5'
23566 3' -63 NC_005261.1 + 13462 0.66 0.534664
Target:  5'- gGCCCCCGcuccucagccuggagGCgGCCGCUGCGgCuGCg- -3'
miRNA:   3'- -CGGGGGCa--------------UG-UGGCGACGCgGcCGau -5'
23566 3' -63 NC_005261.1 + 134690 0.66 0.533707
Target:  5'- cGCCCgCCGcGCugCGCgccgaggcgGcCGCCGcGCUGg -3'
miRNA:   3'- -CGGG-GGCaUGugGCGa--------C-GCGGC-CGAU- -5'
23566 3' -63 NC_005261.1 + 50205 0.66 0.527977
Target:  5'- cGCCCCCagGCACCGCcgGCcgcuuuaacgggcccGCCGGg-- -3'
miRNA:   3'- -CGGGGGcaUGUGGCGa-CG---------------CGGCCgau -5'
23566 3' -63 NC_005261.1 + 68442 0.66 0.52417
Target:  5'- cGCCgCCGcGCGCCGCgggaGCGgcucaguccCCGGCg- -3'
miRNA:   3'- -CGGgGGCaUGUGGCGa---CGC---------GGCCGau -5'
23566 3' -63 NC_005261.1 + 103778 0.66 0.52417
Target:  5'- gGCCCCCG-GC-CCGUgcccgGCGCguuCGGCa- -3'
miRNA:   3'- -CGGGGGCaUGuGGCGa----CGCG---GCCGau -5'
23566 3' -63 NC_005261.1 + 137056 0.66 0.533707
Target:  5'- cGgCCCCGgcCGCgGCgcGgGCCGGCg- -3'
miRNA:   3'- -CgGGGGCauGUGgCGa-CgCGGCCGau -5'
23566 3' -63 NC_005261.1 + 33230 0.66 0.533707
Target:  5'- gGCgCCCCGacCGCCGCccgcgcuggGCGCCGGg-- -3'
miRNA:   3'- -CG-GGGGCauGUGGCGa--------CGCGGCCgau -5'
23566 3' -63 NC_005261.1 + 72187 0.66 0.52417
Target:  5'- gGCCCggggcuggCCGUGgcCGCCGaCUacgacGCGCCGGCg- -3'
miRNA:   3'- -CGGG--------GGCAU--GUGGC-GA-----CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 10957 0.66 0.533707
Target:  5'- uGCCCCCGcgGCgggcgggcccGCCGUaGCGCUGGa-- -3'
miRNA:   3'- -CGGGGGCa-UG----------UGGCGaCGCGGCCgau -5'
23566 3' -63 NC_005261.1 + 43833 0.66 0.52417
Target:  5'- cGCCCuUCGUcgaggaggcCGCCGCcGCGCUGGCc- -3'
miRNA:   3'- -CGGG-GGCAu--------GUGGCGaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 67535 0.66 0.533707
Target:  5'- uGCCCgCGcGgGCCGCgcugGaCGCCuGGCUGg -3'
miRNA:   3'- -CGGGgGCaUgUGGCGa---C-GCGG-CCGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.