Results 1 - 20 of 537 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23566 | 3' | -63 | NC_005261.1 | + | 123576 | 1.07 | 0.000759 |
Target: 5'- gGCCCCCGUACACCGCUGCGCCGGCUAc -3' miRNA: 3'- -CGGGGGCAUGUGGCGACGCGGCCGAU- -5' |
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23566 | 3' | -63 | NC_005261.1 | + | 104618 | 0.82 | 0.050496 |
Target: 5'- cGCCCCCGggcccCGCCGCccGCGCCGGCg- -3' miRNA: 3'- -CGGGGGCau---GUGGCGa-CGCGGCCGau -5' |
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23566 | 3' | -63 | NC_005261.1 | + | 137783 | 0.82 | 0.050496 |
Target: 5'- cGCCCCCGggcccCGCCGCccGCGCCGGCg- -3' miRNA: 3'- -CGGGGGCau---GUGGCGa-CGCGGCCGau -5' |
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23566 | 3' | -63 | NC_005261.1 | + | 100 | 0.82 | 0.050496 |
Target: 5'- cGCCCCCGggcccCGCCGCccGCGCCGGCg- -3' miRNA: 3'- -CGGGGGCau---GUGGCGa-CGCGGCCGau -5' |
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23566 | 3' | -63 | NC_005261.1 | + | 49425 | 0.81 | 0.062233 |
Target: 5'- cGCCCCCGccgccggcguccUGCugCGCgGCGCCGGCg- -3' miRNA: 3'- -CGGGGGC------------AUGugGCGaCGCGGCCGau -5' |
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23566 | 3' | -63 | NC_005261.1 | + | 93974 | 0.8 | 0.072726 |
Target: 5'- cCCCCCGcGCGCCGCgGCGUCGGCc- -3' miRNA: 3'- cGGGGGCaUGUGGCGaCGCGGCCGau -5' |
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23566 | 3' | -63 | NC_005261.1 | + | 53699 | 0.78 | 0.094082 |
Target: 5'- aGCCCCCGgGCGCCGC-GCGCCGcggccaGCUGc -3' miRNA: 3'- -CGGGGGCaUGUGGCGaCGCGGC------CGAU- -5' |
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23566 | 3' | -63 | NC_005261.1 | + | 37748 | 0.78 | 0.096519 |
Target: 5'- cCCCCCGcggGCGCCGCgccgcccaaGCGCCGGCg- -3' miRNA: 3'- cGGGGGCa--UGUGGCGa--------CGCGGCCGau -5' |
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23566 | 3' | -63 | NC_005261.1 | + | 40404 | 0.78 | 0.101572 |
Target: 5'- cGCCCCCGUuuuUGCCGCcgucugcggggGCGCCGGCg- -3' miRNA: 3'- -CGGGGGCAu--GUGGCGa----------CGCGGCCGau -5' |
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23566 | 3' | -63 | NC_005261.1 | + | 101399 | 0.77 | 0.109901 |
Target: 5'- aGCCCCCGggcgccgGCACCGCauaccggggcacguaGCGCCGGCc- -3' miRNA: 3'- -CGGGGGCa------UGUGGCGa--------------CGCGGCCGau -5' |
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23566 | 3' | -63 | NC_005261.1 | + | 95756 | 0.77 | 0.115026 |
Target: 5'- cGCCgCCGgggGCGCCgggagccucgcgcGCUGCGCCGGCg- -3' miRNA: 3'- -CGGgGGCa--UGUGG-------------CGACGCGGCCGau -5' |
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23566 | 3' | -63 | NC_005261.1 | + | 129301 | 0.76 | 0.127544 |
Target: 5'- cGCCCCCG-GCGCCccgcgcCUGCGCUGGCg- -3' miRNA: 3'- -CGGGGGCaUGUGGc-----GACGCGGCCGau -5' |
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23566 | 3' | -63 | NC_005261.1 | + | 42485 | 0.76 | 0.136805 |
Target: 5'- cGCCCCCGgcggcggcggcgGCGCCGCUGaGCgCGGCg- -3' miRNA: 3'- -CGGGGGCa-----------UGUGGCGACgCG-GCCGau -5' |
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23566 | 3' | -63 | NC_005261.1 | + | 42430 | 0.76 | 0.144511 |
Target: 5'- aGCCCCCGccggcGCGCgGCUagcagcGCGCCGGCg- -3' miRNA: 3'- -CGGGGGCa----UGUGgCGA------CGCGGCCGau -5' |
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23566 | 3' | -63 | NC_005261.1 | + | 39937 | 0.76 | 0.144511 |
Target: 5'- cGCCCCCG-AgGCCGCggacGCGCCgGGCg- -3' miRNA: 3'- -CGGGGGCaUgUGGCGa---CGCGG-CCGau -5' |
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23566 | 3' | -63 | NC_005261.1 | + | 49272 | 0.76 | 0.148143 |
Target: 5'- aGCCCCCGa--GCCGC-GCGCUGGCc- -3' miRNA: 3'- -CGGGGGCaugUGGCGaCGCGGCCGau -5' |
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23566 | 3' | -63 | NC_005261.1 | + | 33584 | 0.75 | 0.151858 |
Target: 5'- aGCCCCgCGaGCACCagggGCgGCGCCGGCg- -3' miRNA: 3'- -CGGGG-GCaUGUGG----CGaCGCGGCCGau -5' |
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23566 | 3' | -63 | NC_005261.1 | + | 138101 | 0.75 | 0.151858 |
Target: 5'- aGCCCCgCGaGCACCagggGCgGCGCCGGCg- -3' miRNA: 3'- -CGGGG-GCaUGUGG----CGaCGCGGCCGau -5' |
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23566 | 3' | -63 | NC_005261.1 | + | 418 | 0.75 | 0.151858 |
Target: 5'- aGCCCCgCGaGCACCagggGCgGCGCCGGCg- -3' miRNA: 3'- -CGGGG-GCaUGUGG----CGaCGCGGCCGau -5' |
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23566 | 3' | -63 | NC_005261.1 | + | 53536 | 0.75 | 0.155657 |
Target: 5'- uGCUCgCGUGC-CCGC-GCGCCGGCUu -3' miRNA: 3'- -CGGGgGCAUGuGGCGaCGCGGCCGAu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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