miRNA display CGI


Results 1 - 20 of 537 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 100 0.82 0.050496
Target:  5'- cGCCCCCGggcccCGCCGCccGCGCCGGCg- -3'
miRNA:   3'- -CGGGGGCau---GUGGCGa-CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 131 0.67 0.514699
Target:  5'- cGCCCCUgGUGC-UCGCgGgGCUGGCa- -3'
miRNA:   3'- -CGGGGG-CAUGuGGCGaCgCGGCCGau -5'
23566 3' -63 NC_005261.1 + 235 0.68 0.459491
Target:  5'- gGCCCCgCGaGCggGCCcgGCUGCGgCGGCg- -3'
miRNA:   3'- -CGGGG-GCaUG--UGG--CGACGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 418 0.75 0.151858
Target:  5'- aGCCCCgCGaGCACCagggGCgGCGCCGGCg- -3'
miRNA:   3'- -CGGGG-GCaUGUGG----CGaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 1217 0.72 0.257425
Target:  5'- cCCCCCGccgAUGCCGCcGuCGCCGGCc- -3'
miRNA:   3'- cGGGGGCa--UGUGGCGaC-GCGGCCGau -5'
23566 3' -63 NC_005261.1 + 1251 0.7 0.336282
Target:  5'- aGCCCgaguCCGUGC-CCGggggugaCUGUGCCGGCg- -3'
miRNA:   3'- -CGGG----GGCAUGuGGC-------GACGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 1300 0.66 0.533707
Target:  5'- gGCUCCCGU-CGCCG--GCGgCGGCa- -3'
miRNA:   3'- -CGGGGGCAuGUGGCgaCGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 1323 0.71 0.295138
Target:  5'- cGCgCUCCGggACGCCGCcGCGCCGcGCc- -3'
miRNA:   3'- -CG-GGGGCa-UGUGGCGaCGCGGC-CGau -5'
23566 3' -63 NC_005261.1 + 1390 0.67 0.47756
Target:  5'- gGCCaCgCCGgGCGCCGCggccGCGgCGGCg- -3'
miRNA:   3'- -CGG-G-GGCaUGUGGCGa---CGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 1583 0.68 0.459491
Target:  5'- aGCCCCCagcgGUugGCgGC-GCGgUGGCUGg -3'
miRNA:   3'- -CGGGGG----CAugUGgCGaCGCgGCCGAU- -5'
23566 3' -63 NC_005261.1 + 1617 0.71 0.288565
Target:  5'- cGCCCUCGgcgcGCGCgcgccgcuccaCGCUGCGCCgGGCg- -3'
miRNA:   3'- -CGGGGGCa---UGUG-----------GCGACGCGG-CCGau -5'
23566 3' -63 NC_005261.1 + 2233 0.68 0.450595
Target:  5'- aGCCCgCCGcGCACCgGCggccacucagGcCGCCGGCg- -3'
miRNA:   3'- -CGGG-GGCaUGUGG-CGa---------C-GCGGCCGau -5'
23566 3' -63 NC_005261.1 + 2541 0.66 0.582201
Target:  5'- gGCCgCCa-GCGCCGCgGCGCUgGGCg- -3'
miRNA:   3'- -CGGgGGcaUGUGGCGaCGCGG-CCGau -5'
23566 3' -63 NC_005261.1 + 2665 0.68 0.415987
Target:  5'- gGCUCCCGccGCGCUggggacccgGCggcGCGCCGGCUu -3'
miRNA:   3'- -CGGGGGCa-UGUGG---------CGa--CGCGGCCGAu -5'
23566 3' -63 NC_005261.1 + 2781 0.7 0.322589
Target:  5'- cGCCCCCGagGgGCUGC--CGCCGGCg- -3'
miRNA:   3'- -CGGGGGCa-UgUGGCGacGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 3257 0.72 0.263426
Target:  5'- cGgCCCCGUccuCGCCGuCUGCgucGCCGGCg- -3'
miRNA:   3'- -CgGGGGCAu--GUGGC-GACG---CGGCCGau -5'
23566 3' -63 NC_005261.1 + 3333 0.68 0.441793
Target:  5'- aCCUCCacccGCGCCGCgGCGCcCGGCg- -3'
miRNA:   3'- cGGGGGca--UGUGGCGaCGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 3717 0.66 0.56169
Target:  5'- aGCUCagacGCGCCGCUgccggacGCGCCGGCg- -3'
miRNA:   3'- -CGGGggcaUGUGGCGA-------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 3827 0.66 0.572412
Target:  5'- uGCCgcgggCCCGgGCGCUgGCggcagcgGCGCCGGCg- -3'
miRNA:   3'- -CGG-----GGGCaUGUGG-CGa------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 3911 0.73 0.229089
Target:  5'- gGCgCCC--GCGCCGCcgGCGCCGGCc- -3'
miRNA:   3'- -CGgGGGcaUGUGGCGa-CGCGGCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.