miRNA display CGI


Results 1 - 20 of 537 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 3' -63 NC_005261.1 + 135850 0.75 0.167577
Target:  5'- cGCCgCCaGcGCGCCGCUGCGgCGGCg- -3'
miRNA:   3'- -CGGgGG-CaUGUGGCGACGCgGCCGau -5'
23566 3' -63 NC_005261.1 + 90527 0.75 0.155657
Target:  5'- gGCCCCCG-ACGCCGCcgacgcgGCGCCgcgGGCg- -3'
miRNA:   3'- -CGGGGGCaUGUGGCGa------CGCGG---CCGau -5'
23566 3' -63 NC_005261.1 + 135682 0.75 0.159543
Target:  5'- cGCCCgCGcccaGCGCCGCgGCGCUGGCg- -3'
miRNA:   3'- -CGGGgGCa---UGUGGCGaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 7979 0.75 0.159543
Target:  5'- cGCCCCCaGUACgaGCCGCUG-GCgCGGCg- -3'
miRNA:   3'- -CGGGGG-CAUG--UGGCGACgCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 8508 0.75 0.159543
Target:  5'- cGCCCCU----GCCGCUGCaGCCGGCg- -3'
miRNA:   3'- -CGGGGGcaugUGGCGACG-CGGCCGau -5'
23566 3' -63 NC_005261.1 + 31558 0.75 0.163515
Target:  5'- gGCCCUCGgGCGCgCGCUggacgaccGCGCCGGCg- -3'
miRNA:   3'- -CGGGGGCaUGUG-GCGA--------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 48151 0.75 0.163515
Target:  5'- gGCCCCCGUcgcugcccucgGCGcCCGCgggGCGCCgcuGGCUGu -3'
miRNA:   3'- -CGGGGGCA-----------UGU-GGCGa--CGCGG---CCGAU- -5'
23566 3' -63 NC_005261.1 + 136824 0.75 0.163515
Target:  5'- cGCCCCCGccgcCGCCGCggccgcgGCGCcCGGCg- -3'
miRNA:   3'- -CGGGGGCau--GUGGCGa------CGCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 102536 0.75 0.167577
Target:  5'- aGCCCCCGgccCACCGggGCucGCCGGCg- -3'
miRNA:   3'- -CGGGGGCau-GUGGCgaCG--CGGCCGau -5'
23566 3' -63 NC_005261.1 + 53536 0.75 0.155657
Target:  5'- uGCUCgCGUGC-CCGC-GCGCCGGCUu -3'
miRNA:   3'- -CGGGgGCAUGuGGCGaCGCGGCCGAu -5'
23566 3' -63 NC_005261.1 + 138101 0.75 0.151858
Target:  5'- aGCCCCgCGaGCACCagggGCgGCGCCGGCg- -3'
miRNA:   3'- -CGGGG-GCaUGUGG----CGaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 418 0.75 0.151858
Target:  5'- aGCCCCgCGaGCACCagggGCgGCGCCGGCg- -3'
miRNA:   3'- -CGGGG-GCaUGUGG----CGaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 49425 0.81 0.062233
Target:  5'- cGCCCCCGccgccggcguccUGCugCGCgGCGCCGGCg- -3'
miRNA:   3'- -CGGGGGC------------AUGugGCGaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 93974 0.8 0.072726
Target:  5'- cCCCCCGcGCGCCGCgGCGUCGGCc- -3'
miRNA:   3'- cGGGGGCaUGUGGCGaCGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 40404 0.78 0.101572
Target:  5'- cGCCCCCGUuuuUGCCGCcgucugcggggGCGCCGGCg- -3'
miRNA:   3'- -CGGGGGCAu--GUGGCGa----------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 101399 0.77 0.109901
Target:  5'- aGCCCCCGggcgccgGCACCGCauaccggggcacguaGCGCCGGCc- -3'
miRNA:   3'- -CGGGGGCa------UGUGGCGa--------------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 42485 0.76 0.136805
Target:  5'- cGCCCCCGgcggcggcggcgGCGCCGCUGaGCgCGGCg- -3'
miRNA:   3'- -CGGGGGCa-----------UGUGGCGACgCG-GCCGau -5'
23566 3' -63 NC_005261.1 + 39937 0.76 0.144511
Target:  5'- cGCCCCCG-AgGCCGCggacGCGCCgGGCg- -3'
miRNA:   3'- -CGGGGGCaUgUGGCGa---CGCGG-CCGau -5'
23566 3' -63 NC_005261.1 + 42430 0.76 0.144511
Target:  5'- aGCCCCCGccggcGCGCgGCUagcagcGCGCCGGCg- -3'
miRNA:   3'- -CGGGGGCa----UGUGgCGA------CGCGGCCGau -5'
23566 3' -63 NC_005261.1 + 49272 0.76 0.148143
Target:  5'- aGCCCCCGa--GCCGC-GCGCUGGCc- -3'
miRNA:   3'- -CGGGGGCaugUGGCGaCGCGGCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.