Results 1 - 20 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23566 | 5' | -57.1 | NC_005261.1 | + | 123610 | 1.08 | 0.001953 |
Target: 5'- cAGCAGCAGGUUCAGGCUGCCCAUCAGc -3' miRNA: 3'- -UCGUCGUCCAAGUCCGACGGGUAGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 24755 | 0.8 | 0.160671 |
Target: 5'- cAGCGGCAGGUUCGGGCgcagcagcucgccGCUCAUCGu -3' miRNA: 3'- -UCGUCGUCCAAGUCCGa------------CGGGUAGUc -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 38659 | 0.77 | 0.237388 |
Target: 5'- aAGCGGCGGGUgCGGGCccggGCCCGcCAGu -3' miRNA: 3'- -UCGUCGUCCAaGUCCGa---CGGGUaGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 11711 | 0.77 | 0.237388 |
Target: 5'- cGCGGCGGGcgCGGGC-GCCCAggCAGa -3' miRNA: 3'- uCGUCGUCCaaGUCCGaCGGGUa-GUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 92813 | 0.74 | 0.371462 |
Target: 5'- cGGCGGCGGGcgCAGGC-GCCgCAgCAGg -3' miRNA: 3'- -UCGUCGUCCaaGUCCGaCGG-GUaGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 48230 | 0.74 | 0.371462 |
Target: 5'- cAGCAgGCAGGUgaagacgCGGaucuGCUGCCCGUCAa -3' miRNA: 3'- -UCGU-CGUCCAa------GUC----CGACGGGUAGUc -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 15065 | 0.73 | 0.396838 |
Target: 5'- cGCGGCGGGgucgggggUCAGGCUcGCCC-UCGu -3' miRNA: 3'- uCGUCGUCCa-------AGUCCGA-CGGGuAGUc -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 129616 | 0.73 | 0.405542 |
Target: 5'- cGCGGCGGGgUCGGGC-GCCUuugCAGg -3' miRNA: 3'- uCGUCGUCCaAGUCCGaCGGGua-GUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 101491 | 0.73 | 0.405542 |
Target: 5'- cGCAGCAGGUUCuugAGGUUGgCCAgccCGGc -3' miRNA: 3'- uCGUCGUCCAAG---UCCGACgGGUa--GUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 40716 | 0.73 | 0.423303 |
Target: 5'- aAGCAGCgAGGggggcgcgUGGGCguaGCCCAUCAGc -3' miRNA: 3'- -UCGUCG-UCCaa------GUCCGa--CGGGUAGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 64489 | 0.72 | 0.441523 |
Target: 5'- uGCAGCGGGUggcgCGGGUgcucgggGCCCG-CGGg -3' miRNA: 3'- uCGUCGUCCAa---GUCCGa------CGGGUaGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 125412 | 0.72 | 0.450798 |
Target: 5'- gAGCGGCGcGGgcggcgcUCAGGCcGCCCAUCc- -3' miRNA: 3'- -UCGUCGU-CCa------AGUCCGaCGGGUAGuc -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 103804 | 0.72 | 0.469663 |
Target: 5'- cGGCAGCAGGggCAGGCgcggGCCgCGc--- -3' miRNA: 3'- -UCGUCGUCCaaGUCCGa---CGG-GUaguc -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 63964 | 0.71 | 0.488922 |
Target: 5'- cGCAGCuGGUgcgucagcgccagCGGGCUcagcuugaaguagccGCCCAUCAGc -3' miRNA: 3'- uCGUCGuCCAa------------GUCCGA---------------CGGGUAGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 65394 | 0.71 | 0.488922 |
Target: 5'- uGCGGCGGGUU-GGGCgGCCCcggCAGc -3' miRNA: 3'- uCGUCGUCCAAgUCCGaCGGGua-GUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 10940 | 0.71 | 0.49869 |
Target: 5'- cAGcCGGCGGGga-GGGCUGCCCccgCGGc -3' miRNA: 3'- -UC-GUCGUCCaagUCCGACGGGua-GUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 90903 | 0.71 | 0.49869 |
Target: 5'- cGCGGCAGGUcucggCGGcGCUcuuccgcccGCCCAUCAa -3' miRNA: 3'- uCGUCGUCCAa----GUC-CGA---------CGGGUAGUc -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 22225 | 0.71 | 0.508544 |
Target: 5'- cGGCGGCucAGGccgccUCGGGCgGCUCGUCAGc -3' miRNA: 3'- -UCGUCG--UCCa----AGUCCGaCGGGUAGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 21587 | 0.71 | 0.518479 |
Target: 5'- cGGCGGCGGGcgcgCGGGCcucGCCCucGUCGGc -3' miRNA: 3'- -UCGUCGUCCaa--GUCCGa--CGGG--UAGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 108874 | 0.71 | 0.518479 |
Target: 5'- cAGCAGCGGGUggacgaCGGccgcGCUGCCCGcCGGc -3' miRNA: 3'- -UCGUCGUCCAa-----GUC----CGACGGGUaGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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