miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 5' -57.1 NC_005261.1 + 123610 1.08 0.001953
Target:  5'- cAGCAGCAGGUUCAGGCUGCCCAUCAGc -3'
miRNA:   3'- -UCGUCGUCCAAGUCCGACGGGUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 24755 0.8 0.160671
Target:  5'- cAGCGGCAGGUUCGGGCgcagcagcucgccGCUCAUCGu -3'
miRNA:   3'- -UCGUCGUCCAAGUCCGa------------CGGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 38659 0.77 0.237388
Target:  5'- aAGCGGCGGGUgCGGGCccggGCCCGcCAGu -3'
miRNA:   3'- -UCGUCGUCCAaGUCCGa---CGGGUaGUC- -5'
23566 5' -57.1 NC_005261.1 + 11711 0.77 0.237388
Target:  5'- cGCGGCGGGcgCGGGC-GCCCAggCAGa -3'
miRNA:   3'- uCGUCGUCCaaGUCCGaCGGGUa-GUC- -5'
23566 5' -57.1 NC_005261.1 + 92813 0.74 0.371462
Target:  5'- cGGCGGCGGGcgCAGGC-GCCgCAgCAGg -3'
miRNA:   3'- -UCGUCGUCCaaGUCCGaCGG-GUaGUC- -5'
23566 5' -57.1 NC_005261.1 + 48230 0.74 0.371462
Target:  5'- cAGCAgGCAGGUgaagacgCGGaucuGCUGCCCGUCAa -3'
miRNA:   3'- -UCGU-CGUCCAa------GUC----CGACGGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 15065 0.73 0.396838
Target:  5'- cGCGGCGGGgucgggggUCAGGCUcGCCC-UCGu -3'
miRNA:   3'- uCGUCGUCCa-------AGUCCGA-CGGGuAGUc -5'
23566 5' -57.1 NC_005261.1 + 129616 0.73 0.405542
Target:  5'- cGCGGCGGGgUCGGGC-GCCUuugCAGg -3'
miRNA:   3'- uCGUCGUCCaAGUCCGaCGGGua-GUC- -5'
23566 5' -57.1 NC_005261.1 + 101491 0.73 0.405542
Target:  5'- cGCAGCAGGUUCuugAGGUUGgCCAgccCGGc -3'
miRNA:   3'- uCGUCGUCCAAG---UCCGACgGGUa--GUC- -5'
23566 5' -57.1 NC_005261.1 + 40716 0.73 0.423303
Target:  5'- aAGCAGCgAGGggggcgcgUGGGCguaGCCCAUCAGc -3'
miRNA:   3'- -UCGUCG-UCCaa------GUCCGa--CGGGUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 64489 0.72 0.441523
Target:  5'- uGCAGCGGGUggcgCGGGUgcucgggGCCCG-CGGg -3'
miRNA:   3'- uCGUCGUCCAa---GUCCGa------CGGGUaGUC- -5'
23566 5' -57.1 NC_005261.1 + 125412 0.72 0.450798
Target:  5'- gAGCGGCGcGGgcggcgcUCAGGCcGCCCAUCc- -3'
miRNA:   3'- -UCGUCGU-CCa------AGUCCGaCGGGUAGuc -5'
23566 5' -57.1 NC_005261.1 + 103804 0.72 0.469663
Target:  5'- cGGCAGCAGGggCAGGCgcggGCCgCGc--- -3'
miRNA:   3'- -UCGUCGUCCaaGUCCGa---CGG-GUaguc -5'
23566 5' -57.1 NC_005261.1 + 63964 0.71 0.488922
Target:  5'- cGCAGCuGGUgcgucagcgccagCGGGCUcagcuugaaguagccGCCCAUCAGc -3'
miRNA:   3'- uCGUCGuCCAa------------GUCCGA---------------CGGGUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 65394 0.71 0.488922
Target:  5'- uGCGGCGGGUU-GGGCgGCCCcggCAGc -3'
miRNA:   3'- uCGUCGUCCAAgUCCGaCGGGua-GUC- -5'
23566 5' -57.1 NC_005261.1 + 10940 0.71 0.49869
Target:  5'- cAGcCGGCGGGga-GGGCUGCCCccgCGGc -3'
miRNA:   3'- -UC-GUCGUCCaagUCCGACGGGua-GUC- -5'
23566 5' -57.1 NC_005261.1 + 90903 0.71 0.49869
Target:  5'- cGCGGCAGGUcucggCGGcGCUcuuccgcccGCCCAUCAa -3'
miRNA:   3'- uCGUCGUCCAa----GUC-CGA---------CGGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 22225 0.71 0.508544
Target:  5'- cGGCGGCucAGGccgccUCGGGCgGCUCGUCAGc -3'
miRNA:   3'- -UCGUCG--UCCa----AGUCCGaCGGGUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 21587 0.71 0.518479
Target:  5'- cGGCGGCGGGcgcgCGGGCcucGCCCucGUCGGc -3'
miRNA:   3'- -UCGUCGUCCaa--GUCCGa--CGGG--UAGUC- -5'
23566 5' -57.1 NC_005261.1 + 108874 0.71 0.518479
Target:  5'- cAGCAGCGGGUggacgaCGGccgcGCUGCCCGcCGGc -3'
miRNA:   3'- -UCGUCGUCCAa-----GUC----CGACGGGUaGUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.