miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 5' -57.1 NC_005261.1 + 450 0.66 0.792143
Target:  5'- gGGCGGCGGGgcccggGGGCgcGCCCcgCAc -3'
miRNA:   3'- -UCGUCGUCCaag---UCCGa-CGGGuaGUc -5'
23566 5' -57.1 NC_005261.1 + 2612 0.71 0.538571
Target:  5'- cGGCGGCGGGgccgcCGGGCggcaugggGCCCAgcacgCGGg -3'
miRNA:   3'- -UCGUCGUCCaa---GUCCGa-------CGGGUa----GUC- -5'
23566 5' -57.1 NC_005261.1 + 2686 0.66 0.792143
Target:  5'- cAGgGGCAGGUUCuuGGCggcaacgaacuUGCaccaCGUCAGg -3'
miRNA:   3'- -UCgUCGUCCAAGu-CCG-----------ACGg---GUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 3719 0.68 0.673065
Target:  5'- cAGCuGCAGGcgCAGGCUGUgCUcgUAGu -3'
miRNA:   3'- -UCGuCGUCCaaGUCCGACG-GGuaGUC- -5'
23566 5' -57.1 NC_005261.1 + 4078 0.69 0.66269
Target:  5'- cAGCAGCcccGGGUggcgcCAGGCgcaGCCCAggGGg -3'
miRNA:   3'- -UCGUCG---UCCAa----GUCCGa--CGGGUagUC- -5'
23566 5' -57.1 NC_005261.1 + 4447 0.7 0.569182
Target:  5'- cAGCAGCGGGcccUCcagcGGCggcgGCCCGUCGc -3'
miRNA:   3'- -UCGUCGUCCa--AGu---CCGa---CGGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 5368 0.68 0.714127
Target:  5'- --gGGCAGGcgCAGGCUguGCCCGUg-- -3'
miRNA:   3'- ucgUCGUCCaaGUCCGA--CGGGUAguc -5'
23566 5' -57.1 NC_005261.1 + 6398 0.7 0.558923
Target:  5'- cGCAGCAGG--CGGGC-GCCgCGUCAa -3'
miRNA:   3'- uCGUCGUCCaaGUCCGaCGG-GUAGUc -5'
23566 5' -57.1 NC_005261.1 + 6438 0.68 0.714127
Target:  5'- gGGCGGUccgGGGgccggcCGGGCUGCCCG-CAc -3'
miRNA:   3'- -UCGUCG---UCCaa----GUCCGACGGGUaGUc -5'
23566 5' -57.1 NC_005261.1 + 6441 0.66 0.801322
Target:  5'- cGCGGCGGGcgC-GGCgucgggGCCCAgCGGc -3'
miRNA:   3'- uCGUCGUCCaaGuCCGa-----CGGGUaGUC- -5'
23566 5' -57.1 NC_005261.1 + 9103 0.69 0.642913
Target:  5'- aAGCGGCAGGgcuccccagggggcCAGGCUGUCgG-CAGg -3'
miRNA:   3'- -UCGUCGUCCaa------------GUCCGACGGgUaGUC- -5'
23566 5' -57.1 NC_005261.1 + 9141 0.66 0.800411
Target:  5'- cGGguGCAGGcaaaUCGGGCUgggaccuggcgccGCCCGgcCAGg -3'
miRNA:   3'- -UCguCGUCCa---AGUCCGA-------------CGGGUa-GUC- -5'
23566 5' -57.1 NC_005261.1 + 9624 0.66 0.827868
Target:  5'- gGGCAgGCGGGggUgggggcuggguGGGCgggGCCCAcUCGGg -3'
miRNA:   3'- -UCGU-CGUCCaaG-----------UCCGa--CGGGU-AGUC- -5'
23566 5' -57.1 NC_005261.1 + 10940 0.71 0.49869
Target:  5'- cAGcCGGCGGGga-GGGCUGCCCccgCGGc -3'
miRNA:   3'- -UC-GUCGUCCaagUCCGACGGGua-GUC- -5'
23566 5' -57.1 NC_005261.1 + 11711 0.77 0.237388
Target:  5'- cGCGGCGGGcgCGGGC-GCCCAggCAGa -3'
miRNA:   3'- uCGUCGUCCaaGUCCGaCGGGUa-GUC- -5'
23566 5' -57.1 NC_005261.1 + 12769 0.69 0.66269
Target:  5'- aGGCGGC-GGUggCGGGggGCUCGUCGGc -3'
miRNA:   3'- -UCGUCGuCCAa-GUCCgaCGGGUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 15065 0.73 0.396838
Target:  5'- cGCGGCGGGgucgggggUCAGGCUcGCCC-UCGu -3'
miRNA:   3'- uCGUCGUCCa-------AGUCCGA-CGGGuAGUc -5'
23566 5' -57.1 NC_005261.1 + 15299 0.66 0.792143
Target:  5'- cGCGGCcuccGGGUcgUCGGaGCcggGCCCGUCGa -3'
miRNA:   3'- uCGUCG----UCCA--AGUC-CGa--CGGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 18381 0.69 0.641871
Target:  5'- gAGCgcacGGuCAGGggCAGGCUGCCgggGUCGGc -3'
miRNA:   3'- -UCG----UC-GUCCaaGUCCGACGGg--UAGUC- -5'
23566 5' -57.1 NC_005261.1 + 20039 0.66 0.801322
Target:  5'- cGCGGCAGGcgCGGG--GCCCG-CGGc -3'
miRNA:   3'- uCGUCGUCCaaGUCCgaCGGGUaGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.