Results 1 - 20 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23566 | 5' | -57.1 | NC_005261.1 | + | 26979 | 0.68 | 0.673065 |
Target: 5'- cAGCGGCAGGU---GGCcuggGCCCGgccgCGGg -3' miRNA: 3'- -UCGUCGUCCAaguCCGa---CGGGUa---GUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 88175 | 0.7 | 0.579486 |
Target: 5'- cGGCAGCGGGcuucucgcggCGGcGCUGCaCCGUCGc -3' miRNA: 3'- -UCGUCGUCCaa--------GUC-CGACG-GGUAGUc -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 48794 | 0.69 | 0.610604 |
Target: 5'- cAGCacGGCGGGcgCGGGgaGCCCggCGGc -3' miRNA: 3'- -UCG--UCGUCCaaGUCCgaCGGGuaGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 99829 | 0.69 | 0.610604 |
Target: 5'- cAGCGGCgAGGggu-GGCUGUgCGUCAGc -3' miRNA: 3'- -UCGUCG-UCCaaguCCGACGgGUAGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 70039 | 0.69 | 0.631445 |
Target: 5'- cGGCGGCGGGggCgAGGggGCCCG-CGGc -3' miRNA: 3'- -UCGUCGUCCaaG-UCCgaCGGGUaGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 18381 | 0.69 | 0.641871 |
Target: 5'- gAGCgcacGGuCAGGggCAGGCUGCCgggGUCGGc -3' miRNA: 3'- -UCG----UC-GUCCaaGUCCGACGGg--UAGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 9103 | 0.69 | 0.642913 |
Target: 5'- aAGCGGCAGGgcuccccagggggcCAGGCUGUCgG-CAGg -3' miRNA: 3'- -UCGUCGUCCaa------------GUCCGACGGgUaGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 4078 | 0.69 | 0.66269 |
Target: 5'- cAGCAGCcccGGGUggcgcCAGGCgcaGCCCAggGGg -3' miRNA: 3'- -UCGUCG---UCCAa----GUCCGa--CGGGUagUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 3719 | 0.68 | 0.673065 |
Target: 5'- cAGCuGCAGGcgCAGGCUGUgCUcgUAGu -3' miRNA: 3'- -UCGuCGUCCaaGUCCGACG-GGuaGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 108964 | 0.7 | 0.569182 |
Target: 5'- cAGCAGCGGGcccUCcagcGGCggcgGCCCGUCGc -3' miRNA: 3'- -UCGUCGUCCa--AGu---CCGa---CGGGUAGUc -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 6398 | 0.7 | 0.558923 |
Target: 5'- cGCAGCAGG--CGGGC-GCCgCGUCAa -3' miRNA: 3'- uCGUCGUCCaaGUCCGaCGG-GUAGUc -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 126341 | 0.7 | 0.544652 |
Target: 5'- cGCGGCGGGcgcgcgugcgggCGGGCUcGCCCcgCAGc -3' miRNA: 3'- uCGUCGUCCaa----------GUCCGA-CGGGuaGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 11711 | 0.77 | 0.237388 |
Target: 5'- cGCGGCGGGcgCGGGC-GCCCAggCAGa -3' miRNA: 3'- uCGUCGUCCaaGUCCGaCGGGUa-GUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 48230 | 0.74 | 0.371462 |
Target: 5'- cAGCAgGCAGGUgaagacgCGGaucuGCUGCCCGUCAa -3' miRNA: 3'- -UCGU-CGUCCAa------GUC----CGACGGGUAGUc -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 92813 | 0.74 | 0.371462 |
Target: 5'- cGGCGGCGGGcgCAGGC-GCCgCAgCAGg -3' miRNA: 3'- -UCGUCGUCCaaGUCCGaCGG-GUaGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 103804 | 0.72 | 0.469663 |
Target: 5'- cGGCAGCAGGggCAGGCgcggGCCgCGc--- -3' miRNA: 3'- -UCGUCGUCCaaGUCCGa---CGG-GUaguc -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 10940 | 0.71 | 0.49869 |
Target: 5'- cAGcCGGCGGGga-GGGCUGCCCccgCGGc -3' miRNA: 3'- -UC-GUCGUCCaagUCCGACGGGua-GUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 22225 | 0.71 | 0.508544 |
Target: 5'- cGGCGGCucAGGccgccUCGGGCgGCUCGUCAGc -3' miRNA: 3'- -UCGUCG--UCCa----AGUCCGaCGGGUAGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 21587 | 0.71 | 0.518479 |
Target: 5'- cGGCGGCGGGcgcgCGGGCcucGCCCucGUCGGc -3' miRNA: 3'- -UCGUCGUCCaa--GUCCGa--CGGG--UAGUC- -5' |
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23566 | 5' | -57.1 | NC_005261.1 | + | 107129 | 0.71 | 0.538571 |
Target: 5'- cGGCGGCGGGgccgcCGGGCggcaugggGCCCAgcacgCGGg -3' miRNA: 3'- -UCGUCGUCCaa---GUCCGa-------CGGGUa----GUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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