miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23566 5' -57.1 NC_005261.1 + 26979 0.68 0.673065
Target:  5'- cAGCGGCAGGU---GGCcuggGCCCGgccgCGGg -3'
miRNA:   3'- -UCGUCGUCCAaguCCGa---CGGGUa---GUC- -5'
23566 5' -57.1 NC_005261.1 + 88175 0.7 0.579486
Target:  5'- cGGCAGCGGGcuucucgcggCGGcGCUGCaCCGUCGc -3'
miRNA:   3'- -UCGUCGUCCaa--------GUC-CGACG-GGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 48794 0.69 0.610604
Target:  5'- cAGCacGGCGGGcgCGGGgaGCCCggCGGc -3'
miRNA:   3'- -UCG--UCGUCCaaGUCCgaCGGGuaGUC- -5'
23566 5' -57.1 NC_005261.1 + 99829 0.69 0.610604
Target:  5'- cAGCGGCgAGGggu-GGCUGUgCGUCAGc -3'
miRNA:   3'- -UCGUCG-UCCaaguCCGACGgGUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 70039 0.69 0.631445
Target:  5'- cGGCGGCGGGggCgAGGggGCCCG-CGGc -3'
miRNA:   3'- -UCGUCGUCCaaG-UCCgaCGGGUaGUC- -5'
23566 5' -57.1 NC_005261.1 + 18381 0.69 0.641871
Target:  5'- gAGCgcacGGuCAGGggCAGGCUGCCgggGUCGGc -3'
miRNA:   3'- -UCG----UC-GUCCaaGUCCGACGGg--UAGUC- -5'
23566 5' -57.1 NC_005261.1 + 9103 0.69 0.642913
Target:  5'- aAGCGGCAGGgcuccccagggggcCAGGCUGUCgG-CAGg -3'
miRNA:   3'- -UCGUCGUCCaa------------GUCCGACGGgUaGUC- -5'
23566 5' -57.1 NC_005261.1 + 4078 0.69 0.66269
Target:  5'- cAGCAGCcccGGGUggcgcCAGGCgcaGCCCAggGGg -3'
miRNA:   3'- -UCGUCG---UCCAa----GUCCGa--CGGGUagUC- -5'
23566 5' -57.1 NC_005261.1 + 3719 0.68 0.673065
Target:  5'- cAGCuGCAGGcgCAGGCUGUgCUcgUAGu -3'
miRNA:   3'- -UCGuCGUCCaaGUCCGACG-GGuaGUC- -5'
23566 5' -57.1 NC_005261.1 + 108964 0.7 0.569182
Target:  5'- cAGCAGCGGGcccUCcagcGGCggcgGCCCGUCGc -3'
miRNA:   3'- -UCGUCGUCCa--AGu---CCGa---CGGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 6398 0.7 0.558923
Target:  5'- cGCAGCAGG--CGGGC-GCCgCGUCAa -3'
miRNA:   3'- uCGUCGUCCaaGUCCGaCGG-GUAGUc -5'
23566 5' -57.1 NC_005261.1 + 126341 0.7 0.544652
Target:  5'- cGCGGCGGGcgcgcgugcgggCGGGCUcGCCCcgCAGc -3'
miRNA:   3'- uCGUCGUCCaa----------GUCCGA-CGGGuaGUC- -5'
23566 5' -57.1 NC_005261.1 + 11711 0.77 0.237388
Target:  5'- cGCGGCGGGcgCGGGC-GCCCAggCAGa -3'
miRNA:   3'- uCGUCGUCCaaGUCCGaCGGGUa-GUC- -5'
23566 5' -57.1 NC_005261.1 + 48230 0.74 0.371462
Target:  5'- cAGCAgGCAGGUgaagacgCGGaucuGCUGCCCGUCAa -3'
miRNA:   3'- -UCGU-CGUCCAa------GUC----CGACGGGUAGUc -5'
23566 5' -57.1 NC_005261.1 + 92813 0.74 0.371462
Target:  5'- cGGCGGCGGGcgCAGGC-GCCgCAgCAGg -3'
miRNA:   3'- -UCGUCGUCCaaGUCCGaCGG-GUaGUC- -5'
23566 5' -57.1 NC_005261.1 + 103804 0.72 0.469663
Target:  5'- cGGCAGCAGGggCAGGCgcggGCCgCGc--- -3'
miRNA:   3'- -UCGUCGUCCaaGUCCGa---CGG-GUaguc -5'
23566 5' -57.1 NC_005261.1 + 10940 0.71 0.49869
Target:  5'- cAGcCGGCGGGga-GGGCUGCCCccgCGGc -3'
miRNA:   3'- -UC-GUCGUCCaagUCCGACGGGua-GUC- -5'
23566 5' -57.1 NC_005261.1 + 22225 0.71 0.508544
Target:  5'- cGGCGGCucAGGccgccUCGGGCgGCUCGUCAGc -3'
miRNA:   3'- -UCGUCG--UCCa----AGUCCGaCGGGUAGUC- -5'
23566 5' -57.1 NC_005261.1 + 21587 0.71 0.518479
Target:  5'- cGGCGGCGGGcgcgCGGGCcucGCCCucGUCGGc -3'
miRNA:   3'- -UCGUCGUCCaa--GUCCGa--CGGG--UAGUC- -5'
23566 5' -57.1 NC_005261.1 + 107129 0.71 0.538571
Target:  5'- cGGCGGCGGGgccgcCGGGCggcaugggGCCCAgcacgCGGg -3'
miRNA:   3'- -UCGUCGUCCaa---GUCCGa-------CGGGUa----GUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.