Results 21 - 40 of 104 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23566 | 5' | -57.1 | NC_005261.1 | + | 113659 | 0.66 | 0.800411 |
Target: 5'- cGGguGCAGGcaaaUCGGGCUgggaccuggcgccGCCCGgcCAGg -3' miRNA: 3'- -UCguCGUCCa---AGUCCGA-------------CGGGUa-GUC- -5' |
|||||||
23566 | 5' | -57.1 | NC_005261.1 | + | 9141 | 0.66 | 0.800411 |
Target: 5'- cGGguGCAGGcaaaUCGGGCUgggaccuggcgccGCCCGgcCAGg -3' miRNA: 3'- -UCguCGUCCa---AGUCCGA-------------CGGGUa-GUC- -5' |
|||||||
23566 | 5' | -57.1 | NC_005261.1 | + | 2686 | 0.66 | 0.792143 |
Target: 5'- cAGgGGCAGGUUCuuGGCggcaacgaacuUGCaccaCGUCAGg -3' miRNA: 3'- -UCgUCGUCCAAGu-CCG-----------ACGg---GUAGUC- -5' |
|||||||
23566 | 5' | -57.1 | NC_005261.1 | + | 450 | 0.66 | 0.792143 |
Target: 5'- gGGCGGCGGGgcccggGGGCgcGCCCcgCAc -3' miRNA: 3'- -UCGUCGUCCaag---UCCGa-CGGGuaGUc -5' |
|||||||
23566 | 5' | -57.1 | NC_005261.1 | + | 138133 | 0.66 | 0.792143 |
Target: 5'- gGGCGGCGGGgcccggGGGCgcGCCCcgCAc -3' miRNA: 3'- -UCGUCGUCCaag---UCCGa-CGGGuaGUc -5' |
|||||||
23566 | 5' | -57.1 | NC_005261.1 | + | 23943 | 0.66 | 0.792143 |
Target: 5'- cGCGGCGGGUUCGGGg---UCGUCGGc -3' miRNA: 3'- uCGUCGUCCAAGUCCgacgGGUAGUC- -5' |
|||||||
23566 | 5' | -57.1 | NC_005261.1 | + | 27367 | 0.66 | 0.792143 |
Target: 5'- cAGCGGUAGGccgCGcGGCUGUUCGcCAGg -3' miRNA: 3'- -UCGUCGUCCaa-GU-CCGACGGGUaGUC- -5' |
|||||||
23566 | 5' | -57.1 | NC_005261.1 | + | 15299 | 0.66 | 0.792143 |
Target: 5'- cGCGGCcuccGGGUcgUCGGaGCcggGCCCGUCGa -3' miRNA: 3'- uCGUCG----UCCA--AGUC-CGa--CGGGUAGUc -5' |
|||||||
23566 | 5' | -57.1 | NC_005261.1 | + | 93383 | 0.66 | 0.792143 |
Target: 5'- gAGCAGgAGGUUgCAGaGCacgcacucGCCCGUCGu -3' miRNA: 3'- -UCGUCgUCCAA-GUC-CGa-------CGGGUAGUc -5' |
|||||||
23566 | 5' | -57.1 | NC_005261.1 | + | 33616 | 0.66 | 0.792143 |
Target: 5'- gGGCGGCGGGgcccggGGGCgcGCCCcgCAc -3' miRNA: 3'- -UCGUCGUCCaag---UCCGa-CGGGuaGUc -5' |
|||||||
23566 | 5' | -57.1 | NC_005261.1 | + | 86191 | 0.66 | 0.782815 |
Target: 5'- gAGCGGCGGGcggggCGGGCguugGCCUcgUAc -3' miRNA: 3'- -UCGUCGUCCaa---GUCCGa---CGGGuaGUc -5' |
|||||||
23566 | 5' | -57.1 | NC_005261.1 | + | 50159 | 0.67 | 0.773347 |
Target: 5'- cGCAGUcuGGGUUCAuGGCUcGgCCGgcgCAGg -3' miRNA: 3'- uCGUCG--UCCAAGU-CCGA-CgGGUa--GUC- -5' |
|||||||
23566 | 5' | -57.1 | NC_005261.1 | + | 128079 | 0.67 | 0.773347 |
Target: 5'- cGCAGguGGggCAgGGCUGgCCGUg-- -3' miRNA: 3'- uCGUCguCCaaGU-CCGACgGGUAguc -5' |
|||||||
23566 | 5' | -57.1 | NC_005261.1 | + | 99227 | 0.67 | 0.773347 |
Target: 5'- cGCGGCAGGcgCGucGGCgucgcGCCCGcCGGg -3' miRNA: 3'- uCGUCGUCCaaGU--CCGa----CGGGUaGUC- -5' |
|||||||
23566 | 5' | -57.1 | NC_005261.1 | + | 107724 | 0.67 | 0.773347 |
Target: 5'- cGCGGCAGGc---GGCUGCgCC-UCGGc -3' miRNA: 3'- uCGUCGUCCaaguCCGACG-GGuAGUC- -5' |
|||||||
23566 | 5' | -57.1 | NC_005261.1 | + | 23562 | 0.67 | 0.773347 |
Target: 5'- cGCAGguGGggCAgGGCUGgCCGUg-- -3' miRNA: 3'- uCGUCguCCaaGU-CCGACgGGUAguc -5' |
|||||||
23566 | 5' | -57.1 | NC_005261.1 | + | 97702 | 0.67 | 0.754027 |
Target: 5'- gGGCGGUGGGgagacggCGGGUgGCCCGggCGGg -3' miRNA: 3'- -UCGUCGUCCaa-----GUCCGaCGGGUa-GUC- -5' |
|||||||
23566 | 5' | -57.1 | NC_005261.1 | + | 88816 | 0.67 | 0.754027 |
Target: 5'- cGGCGGCGGGgcggCGGcGCgcgccgGCCCGgcgUCGGc -3' miRNA: 3'- -UCGUCGUCCaa--GUC-CGa-----CGGGU---AGUC- -5' |
|||||||
23566 | 5' | -57.1 | NC_005261.1 | + | 28688 | 0.67 | 0.754027 |
Target: 5'- cGCGGC-GGUUguGGCgaggggGCCCGcggCGGg -3' miRNA: 3'- uCGUCGuCCAAguCCGa-----CGGGUa--GUC- -5' |
|||||||
23566 | 5' | -57.1 | NC_005261.1 | + | 24628 | 0.67 | 0.744195 |
Target: 5'- uGGcCAGCGGGUgccCGGGCgcgaggucGCCCAgcgCGGc -3' miRNA: 3'- -UC-GUCGUCCAa--GUCCGa-------CGGGUa--GUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home