miRNA display CGI


Results 1 - 20 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 3' -57.7 NC_005261.1 + 108526 0.66 0.773387
Target:  5'- gGCGGCU-CAUGGCCacgcagGCCGCcacgUGCg -3'
miRNA:   3'- aUGUCGAgGUACUGGg-----CGGCGa---ACGg -5'
23567 3' -57.7 NC_005261.1 + 114979 0.66 0.783669
Target:  5'- cUGCAGCUCUcgcccgagcaggccGGCCCGCUGCaccgGCUu -3'
miRNA:   3'- -AUGUCGAGGua------------CUGGGCGGCGaa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 10886 0.66 0.773387
Target:  5'- cGCgGGC-CCAgcgcCCCGCCGCUccgGCCc -3'
miRNA:   3'- aUG-UCGaGGUacu-GGGCGGCGAa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 124195 0.66 0.782741
Target:  5'- gACcGCUCgCAUGGCCC--CGCUgGCCa -3'
miRNA:   3'- aUGuCGAG-GUACUGGGcgGCGAaCGG- -5'
23567 3' -57.7 NC_005261.1 + 78215 0.66 0.782741
Target:  5'- gGCgGGCUCUucGUGucccuGCCCGUCGCgcUGCCc -3'
miRNA:   3'- aUG-UCGAGG--UAC-----UGGGCGGCGa-ACGG- -5'
23567 3' -57.7 NC_005261.1 + 20762 0.66 0.782741
Target:  5'- aGCAGCgcgucgCCGccGACCUGCCGCaccuucUGCa -3'
miRNA:   3'- aUGUCGa-----GGUa-CUGGGCGGCGa-----ACGg -5'
23567 3' -57.7 NC_005261.1 + 87443 0.66 0.782741
Target:  5'- gGCGGCgCCggGGCggccgCCGCCGCggugUGCg -3'
miRNA:   3'- aUGUCGaGGuaCUG-----GGCGGCGa---ACGg -5'
23567 3' -57.7 NC_005261.1 + 134781 0.66 0.782741
Target:  5'- cGCGGCgCgGcGGCCCGCgCGCccGCCu -3'
miRNA:   3'- aUGUCGaGgUaCUGGGCG-GCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 84921 0.66 0.773387
Target:  5'- cUGCGGcCUCCugaucGACCCGCgcacgggggCGCUUGgCg -3'
miRNA:   3'- -AUGUC-GAGGua---CUGGGCG---------GCGAACgG- -5'
23567 3' -57.7 NC_005261.1 + 135627 0.66 0.773387
Target:  5'- gGCGGCcccgCCGccGACggcggcuuCCGCCGCgUGCCg -3'
miRNA:   3'- aUGUCGa---GGUa-CUG--------GGCGGCGaACGG- -5'
23567 3' -57.7 NC_005261.1 + 42742 0.66 0.791959
Target:  5'- cGCGGgUCgAUG--CCGCCGCggGCCu -3'
miRNA:   3'- aUGUCgAGgUACugGGCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 84101 0.66 0.782741
Target:  5'- gUGCGGCgugCCGUGggacgaGCCCGCgGUcgUGCg -3'
miRNA:   3'- -AUGUCGa--GGUAC------UGGGCGgCGa-ACGg -5'
23567 3' -57.7 NC_005261.1 + 133831 0.66 0.791959
Target:  5'- gGCAGCgcgccgCCGccGCCCgGCCGCgUGCg -3'
miRNA:   3'- aUGUCGa-----GGUacUGGG-CGGCGaACGg -5'
23567 3' -57.7 NC_005261.1 + 99281 0.66 0.782741
Target:  5'- cGCAGCccgcgcgCCGcGGCCCGCCcggccgccgGCUUGgCg -3'
miRNA:   3'- aUGUCGa------GGUaCUGGGCGG---------CGAACgG- -5'
23567 3' -57.7 NC_005261.1 + 134360 0.66 0.782741
Target:  5'- aGCuGCgcgCCGUGcucGCCgGCCGCgcggcGCCg -3'
miRNA:   3'- aUGuCGa--GGUAC---UGGgCGGCGaa---CGG- -5'
23567 3' -57.7 NC_005261.1 + 125121 0.66 0.789208
Target:  5'- cGCGGCcgCCGacgcccccgagccgaGCCCGCCGCccGCCg -3'
miRNA:   3'- aUGUCGa-GGUac-------------UGGGCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 68968 0.66 0.773387
Target:  5'- gGCGGCUCgCcgGGgUCGgCGCggGCCa -3'
miRNA:   3'- aUGUCGAG-GuaCUgGGCgGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 97808 0.66 0.773387
Target:  5'- cUGCGGCUCaacgccguguaCGUGGCCCuGUCGCgcagcgUGUCc -3'
miRNA:   3'- -AUGUCGAG-----------GUACUGGG-CGGCGa-----ACGG- -5'
23567 3' -57.7 NC_005261.1 + 50062 0.66 0.773387
Target:  5'- -cCGGCgucgCCccGGCCCgGCUGCgcgGCCg -3'
miRNA:   3'- auGUCGa---GGuaCUGGG-CGGCGaa-CGG- -5'
23567 3' -57.7 NC_005261.1 + 56162 0.66 0.773387
Target:  5'- cUGCGGCacgCCGUcGACCCGgCGaCgugGCCc -3'
miRNA:   3'- -AUGUCGa--GGUA-CUGGGCgGC-Gaa-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.