miRNA display CGI


Results 1 - 20 of 394 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 3' -57.7 NC_005261.1 + 123388 1.1 0.001209
Target:  5'- gUACAGCUCCAUGACCCGCCGCUUGCCg -3'
miRNA:   3'- -AUGUCGAGGUACUGGGCGGCGAACGG- -5'
23567 3' -57.7 NC_005261.1 + 93936 0.81 0.125046
Target:  5'- gGCAGCggCCcUGGCCCGCCGCUggcggcggGCCc -3'
miRNA:   3'- aUGUCGa-GGuACUGGGCGGCGAa-------CGG- -5'
23567 3' -57.7 NC_005261.1 + 105168 0.8 0.157911
Target:  5'- gGCGGCgUCCAcggGGCCCGCCGCc-GCCg -3'
miRNA:   3'- aUGUCG-AGGUa--CUGGGCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 92596 0.8 0.157911
Target:  5'- cACuGCUCCGgcgcgGGCCCGCCGCgccgcGCCg -3'
miRNA:   3'- aUGuCGAGGUa----CUGGGCGGCGaa---CGG- -5'
23567 3' -57.7 NC_005261.1 + 62411 0.79 0.183977
Target:  5'- aGCAGCUCCGc-GCCCGCCGag-GCCa -3'
miRNA:   3'- aUGUCGAGGUacUGGGCGGCgaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 123446 0.79 0.183977
Target:  5'- cGCAGCUCgcgCAUGACgCCGUCGCggGCCu -3'
miRNA:   3'- aUGUCGAG---GUACUG-GGCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 40060 0.79 0.183977
Target:  5'- gGCGGCUCCAaGgacacACCCGCCGCccgcggccUUGCCg -3'
miRNA:   3'- aUGUCGAGGUaC-----UGGGCGGCG--------AACGG- -5'
23567 3' -57.7 NC_005261.1 + 55358 0.78 0.198387
Target:  5'- aGCAGCggcaggcCCAgccUGGCCCGCCGCcgcUGCCg -3'
miRNA:   3'- aUGUCGa------GGU---ACUGGGCGGCGa--ACGG- -5'
23567 3' -57.7 NC_005261.1 + 126870 0.78 0.213772
Target:  5'- cACcGCUCCAUGGCCCGCagcaGCgcaggGCCc -3'
miRNA:   3'- aUGuCGAGGUACUGGGCGg---CGaa---CGG- -5'
23567 3' -57.7 NC_005261.1 + 31908 0.77 0.241682
Target:  5'- cGCGGCUCUAccccggGGCgCCGCCGCUgggcucUGCCg -3'
miRNA:   3'- aUGUCGAGGUa-----CUG-GGCGGCGA------ACGG- -5'
23567 3' -57.7 NC_005261.1 + 136425 0.76 0.253059
Target:  5'- cGCGGCUCUAccccggGGCgCCGCCGCUgcggcucUGCCg -3'
miRNA:   3'- aUGUCGAGGUa-----CUG-GGCGGCGA-------ACGG- -5'
23567 3' -57.7 NC_005261.1 + 127064 0.76 0.259845
Target:  5'- gUACGGgUCCAUgGugCCGCCGCcgcGCCg -3'
miRNA:   3'- -AUGUCgAGGUA-CugGGCGGCGaa-CGG- -5'
23567 3' -57.7 NC_005261.1 + 101755 0.76 0.272563
Target:  5'- gGCAGCUCCAggUGcacGCCCGCCuccagcGCgcgUGCCg -3'
miRNA:   3'- aUGUCGAGGU--AC---UGGGCGG------CGa--ACGG- -5'
23567 3' -57.7 NC_005261.1 + 68721 0.75 0.299488
Target:  5'- -cCAGCUCCGgcaGCCCGCCGCcgGCg -3'
miRNA:   3'- auGUCGAGGUac-UGGGCGGCGaaCGg -5'
23567 3' -57.7 NC_005261.1 + 119063 0.75 0.313704
Target:  5'- gGCAGCugcuUCgCGUGAUCCGCCgGCUgGCCg -3'
miRNA:   3'- aUGUCG----AG-GUACUGGGCGG-CGAaCGG- -5'
23567 3' -57.7 NC_005261.1 + 111623 0.75 0.321002
Target:  5'- cUGCGGCgCCGUGcCgCCGCCGCccGCCg -3'
miRNA:   3'- -AUGUCGaGGUACuG-GGCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 82865 0.75 0.321002
Target:  5'- gGCGGCgggCCAggcugGGCCUGCCGCU-GCUu -3'
miRNA:   3'- aUGUCGa--GGUa----CUGGGCGGCGAaCGG- -5'
23567 3' -57.7 NC_005261.1 + 1321 0.74 0.335975
Target:  5'- cACGcGCUCCggGACgCCGCCGCgccgcGCCu -3'
miRNA:   3'- aUGU-CGAGGuaCUG-GGCGGCGaa---CGG- -5'
23567 3' -57.7 NC_005261.1 + 105838 0.74 0.335975
Target:  5'- cACGcGCUCCggGACgCCGCCGCgccgcGCCu -3'
miRNA:   3'- aUGU-CGAGGuaCUG-GGCGGCGaa---CGG- -5'
23567 3' -57.7 NC_005261.1 + 109753 0.74 0.335975
Target:  5'- aUGCGGCUCCcgG--CCGCCGCgucGCCg -3'
miRNA:   3'- -AUGUCGAGGuaCugGGCGGCGaa-CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.