miRNA display CGI


Results 1 - 20 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 3' -57.7 NC_005261.1 + 96 0.67 0.734784
Target:  5'- gGCGcGCcCCcgGGcCCCGCCGCccgcGCCg -3'
miRNA:   3'- aUGU-CGaGGuaCU-GGGCGGCGaa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 155 0.66 0.8187
Target:  5'- cGCGGgaCCAgGACCgcUGCCGCc-GCCg -3'
miRNA:   3'- aUGUCgaGGUaCUGG--GCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 299 0.69 0.633249
Target:  5'- cGCAGCcgCCGccgcagccgGGCCCGCuCGCgggGCCc -3'
miRNA:   3'- aUGUCGa-GGUa--------CUGGGCG-GCGaa-CGG- -5'
23567 3' -57.7 NC_005261.1 + 1296 0.68 0.684569
Target:  5'- cGCGGC-CCAUGuACCaccacaugCGCCGCg-GCCg -3'
miRNA:   3'- aUGUCGaGGUAC-UGG--------GCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 1321 0.74 0.335975
Target:  5'- cACGcGCUCCggGACgCCGCCGCgccgcGCCu -3'
miRNA:   3'- aUGU-CGAGGuaCUG-GGCGGCGaa---CGG- -5'
23567 3' -57.7 NC_005261.1 + 1465 0.71 0.531442
Target:  5'- gUGCGGCUCCAgcaGCgCgGCCGCgcagaagGCCa -3'
miRNA:   3'- -AUGUCGAGGUac-UG-GgCGGCGaa-----CGG- -5'
23567 3' -57.7 NC_005261.1 + 1527 0.71 0.511691
Target:  5'- -cCAGCUCCAgcGCgCGCCGCccgcagGCCa -3'
miRNA:   3'- auGUCGAGGUacUGgGCGGCGaa----CGG- -5'
23567 3' -57.7 NC_005261.1 + 1597 0.68 0.674357
Target:  5'- gGCGGCgCgGUGGCUgGCCGCcucGCCc -3'
miRNA:   3'- aUGUCGaGgUACUGGgCGGCGaa-CGG- -5'
23567 3' -57.7 NC_005261.1 + 1888 0.69 0.643548
Target:  5'- cACGGCgcgcgCCAgcGCgCGCCGCUcagGCCa -3'
miRNA:   3'- aUGUCGa----GGUacUGgGCGGCGAa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 2221 0.66 0.809947
Target:  5'- aGCAGgUgCGaGAgCCCGCCGCgcaccggcgGCCa -3'
miRNA:   3'- aUGUCgAgGUaCU-GGGCGGCGaa-------CGG- -5'
23567 3' -57.7 NC_005261.1 + 2662 0.68 0.680489
Target:  5'- gGCGGCUCCcgccgcgcugggGACCCGgCgGCgcGCCg -3'
miRNA:   3'- aUGUCGAGGua----------CUGGGC-GgCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 2762 0.67 0.744594
Target:  5'- cGCGGCgggCCucgaGGCCCGCCcccgagggGC-UGCCg -3'
miRNA:   3'- aUGUCGa--GGua--CUGGGCGG--------CGaACGG- -5'
23567 3' -57.7 NC_005261.1 + 2915 0.68 0.683549
Target:  5'- -cCAGCUCCuccGGCCCcagcaccuccaccGCCGCg-GCCg -3'
miRNA:   3'- auGUCGAGGua-CUGGG-------------CGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 3006 0.71 0.511691
Target:  5'- gGCGGCgacgcgcucggCCGUGGCCCucugcGCCGCcucgGCCa -3'
miRNA:   3'- aUGUCGa----------GGUACUGGG-----CGGCGaa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 3217 0.7 0.561559
Target:  5'- cGCGGC-CgCGUGcggGCCCGCCGC--GCCa -3'
miRNA:   3'- aUGUCGaG-GUAC---UGGGCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 3674 0.7 0.592121
Target:  5'- cGCGGCcggcaggCCGcGGCCCGCUGCa-GCCg -3'
miRNA:   3'- aUGUCGa------GGUaCUGGGCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 3714 0.69 0.633249
Target:  5'- gGgAGCUCa--GACgCGCCGC-UGCCg -3'
miRNA:   3'- aUgUCGAGguaCUGgGCGGCGaACGG- -5'
23567 3' -57.7 NC_005261.1 + 4008 0.66 0.773387
Target:  5'- gGCGGCU-CAUGGCCacgcagGCCGCcacgUGCg -3'
miRNA:   3'- aUGUCGAgGUACUGGg-----CGGCGa---ACGg -5'
23567 3' -57.7 NC_005261.1 + 4022 0.68 0.694736
Target:  5'- -cCGGCcgCCGcGACCCGCgCGCcgaGCCg -3'
miRNA:   3'- auGUCGa-GGUaCUGGGCG-GCGaa-CGG- -5'
23567 3' -57.7 NC_005261.1 + 4171 0.68 0.674357
Target:  5'- cUGCAGgUCCG-GGCCCGCgaGCUUcgcgcucugcaGCCa -3'
miRNA:   3'- -AUGUCgAGGUaCUGGGCGg-CGAA-----------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.