Results 1 - 20 of 394 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23567 | 3' | -57.7 | NC_005261.1 | + | 49622 | 0.72 | 0.454444 |
Target: 5'- aGCAGCgucacgaCCGUGGCgCCGCCGg--GCCg -3' miRNA: 3'- aUGUCGa------GGUACUG-GGCGGCgaaCGG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 134220 | 0.73 | 0.383896 |
Target: 5'- gGCGGCcugcguggCCAUGAgCCGCCGCUacgacUGCg -3' miRNA: 3'- aUGUCGa-------GGUACUgGGCGGCGA-----ACGg -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 39261 | 0.73 | 0.409499 |
Target: 5'- gACGuGCUCCggGACCUGCCGa--GCCu -3' miRNA: 3'- aUGU-CGAGGuaCUGGGCGGCgaaCGG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 89361 | 0.73 | 0.409499 |
Target: 5'- gGCGGCUgcgccgCCAUGGCCCgGgCGCUggGCCu -3' miRNA: 3'- aUGUCGA------GGUACUGGG-CgGCGAa-CGG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 10440 | 0.72 | 0.427148 |
Target: 5'- cGCGGCgCC--GGCCCGCCGCUcgagcaGCCg -3' miRNA: 3'- aUGUCGaGGuaCUGGGCGGCGAa-----CGG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 47326 | 0.72 | 0.427148 |
Target: 5'- aAgAGCgccgCCGaGACCUGCCGCgccaUGCCg -3' miRNA: 3'- aUgUCGa---GGUaCUGGGCGGCGa---ACGG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 40002 | 0.72 | 0.43614 |
Target: 5'- cGCGGaaaUCgAUG-CCCGCCGCgcUGCCg -3' miRNA: 3'- aUGUCg--AGgUACuGGGCGGCGa-ACGG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 77179 | 0.72 | 0.451672 |
Target: 5'- aAguGCUCCA-GGCCCagcaccagccagcuGCCGCggUGCCg -3' miRNA: 3'- aUguCGAGGUaCUGGG--------------CGGCGa-ACGG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 14810 | 0.72 | 0.454444 |
Target: 5'- cUGCGGC-CCGUGgcgaGCCCGCCcCUgGCCg -3' miRNA: 3'- -AUGUCGaGGUAC----UGGGCGGcGAaCGG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 78429 | 0.74 | 0.375601 |
Target: 5'- cGCGGCgCCAcgccGGCCUGCCGCccGCCg -3' miRNA: 3'- aUGUCGaGGUa---CUGGGCGGCGaaCGG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 99736 | 0.74 | 0.367428 |
Target: 5'- aUACGacGCUCCAgucGACgCCGCCGCg-GCCg -3' miRNA: 3'- -AUGU--CGAGGUa--CUG-GGCGGCGaaCGG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 48394 | 0.74 | 0.367428 |
Target: 5'- cGCGGC-CCuccGGCCCgGCCGCgaagUGCCg -3' miRNA: 3'- aUGUCGaGGua-CUGGG-CGGCGa---ACGG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 92596 | 0.8 | 0.157911 |
Target: 5'- cACuGCUCCGgcgcgGGCCCGCCGCgccgcGCCg -3' miRNA: 3'- aUGuCGAGGUa----CUGGGCGGCGaa---CGG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 40060 | 0.79 | 0.183977 |
Target: 5'- gGCGGCUCCAaGgacacACCCGCCGCccgcggccUUGCCg -3' miRNA: 3'- aUGUCGAGGUaC-----UGGGCGGCG--------AACGG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 136425 | 0.76 | 0.253059 |
Target: 5'- cGCGGCUCUAccccggGGCgCCGCCGCUgcggcucUGCCg -3' miRNA: 3'- aUGUCGAGGUa-----CUG-GGCGGCGA-------ACGG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 68721 | 0.75 | 0.299488 |
Target: 5'- -cCAGCUCCGgcaGCCCGCCGCcgGCg -3' miRNA: 3'- auGUCGAGGUac-UGGGCGGCGaaCGg -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 119063 | 0.75 | 0.313704 |
Target: 5'- gGCAGCugcuUCgCGUGAUCCGCCgGCUgGCCg -3' miRNA: 3'- aUGUCG----AG-GUACUGGGCGG-CGAaCGG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 82865 | 0.75 | 0.321002 |
Target: 5'- gGCGGCgggCCAggcugGGCCUGCCGCU-GCUu -3' miRNA: 3'- aUGUCGa--GGUa----CUGGGCGGCGAaCGG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 105838 | 0.74 | 0.335975 |
Target: 5'- cACGcGCUCCggGACgCCGCCGCgccgcGCCu -3' miRNA: 3'- aUGU-CGAGGuaCUG-GGCGGCGaa---CGG- -5' |
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23567 | 3' | -57.7 | NC_005261.1 | + | 29499 | 0.74 | 0.343651 |
Target: 5'- cGCGGCgccgCCGcUGGCCCGCgCGCUcuucGCCg -3' miRNA: 3'- aUGUCGa---GGU-ACUGGGCG-GCGAa---CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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