miRNA display CGI


Results 21 - 40 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 3' -57.7 NC_005261.1 + 34256 0.66 0.817833
Target:  5'- gGCGGCgagcgcuUCCGUGuggcGgCCGCCGCggucgcGCCg -3'
miRNA:   3'- aUGUCG-------AGGUAC----UgGGCGGCGaa----CGG- -5'
23567 3' -57.7 NC_005261.1 + 131753 0.66 0.816963
Target:  5'- gACGGCacgCCGgccggcgcggcgGGCgCGCCGCUggGCCc -3'
miRNA:   3'- aUGUCGa--GGUa-----------CUGgGCGGCGAa-CGG- -5'
23567 3' -57.7 NC_005261.1 + 15299 0.66 0.813469
Target:  5'- cGCGGcCUCCGggucgucggagccgGGCCCGUCGaa-GCCg -3'
miRNA:   3'- aUGUC-GAGGUa-------------CUGGGCGGCgaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 38176 0.66 0.809947
Target:  5'- cACGGCUgCCuggaggccugGGCgCGCCGCggcgUGCUg -3'
miRNA:   3'- aUGUCGA-GGua--------CUGgGCGGCGa---ACGG- -5'
23567 3' -57.7 NC_005261.1 + 2221 0.66 0.809947
Target:  5'- aGCAGgUgCGaGAgCCCGCCGCgcaccggcgGCCa -3'
miRNA:   3'- aUGUCgAgGUaCU-GGGCGGCGaa-------CGG- -5'
23567 3' -57.7 NC_005261.1 + 31811 0.66 0.809947
Target:  5'- gGCGuGgaCCGcGGCCCGCUGCagcGCCg -3'
miRNA:   3'- aUGU-CgaGGUaCUGGGCGGCGaa-CGG- -5'
23567 3' -57.7 NC_005261.1 + 40389 0.66 0.809947
Target:  5'- cGCGGCggc---GCCCGCCGCccccguuuUUGCCg -3'
miRNA:   3'- aUGUCGagguacUGGGCGGCG--------AACGG- -5'
23567 3' -57.7 NC_005261.1 + 28878 0.66 0.809947
Target:  5'- cUGCGGCgcg--GACgCCGCCGCcUGCg -3'
miRNA:   3'- -AUGUCGagguaCUG-GGCGGCGaACGg -5'
23567 3' -57.7 NC_005261.1 + 102638 0.66 0.809947
Target:  5'- cGCGGCUUCGUccgcGGCCCGCagcaccuccucCGCggcGCCc -3'
miRNA:   3'- aUGUCGAGGUA----CUGGGCG-----------GCGaa-CGG- -5'
23567 3' -57.7 NC_005261.1 + 107994 0.66 0.809947
Target:  5'- ---uGCUCCA--GCCCGCCGUcggGCa -3'
miRNA:   3'- auguCGAGGUacUGGGCGGCGaa-CGg -5'
23567 3' -57.7 NC_005261.1 + 4544 0.66 0.809947
Target:  5'- cGCAGCUCCcagcgGAgCgaGCCGUUggcGCCg -3'
miRNA:   3'- aUGUCGAGGua---CUgGg-CGGCGAa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 53554 0.66 0.809947
Target:  5'- -cCGGCUUCGUGugCgCgGCCGCggGCg -3'
miRNA:   3'- auGUCGAGGUACugG-G-CGGCGaaCGg -5'
23567 3' -57.7 NC_005261.1 + 43855 0.66 0.809947
Target:  5'- cGCcGCgcuggCCAUcGACCgGCCGUgcgcugugUGCCg -3'
miRNA:   3'- aUGuCGa----GGUA-CUGGgCGGCGa-------ACGG- -5'
23567 3' -57.7 NC_005261.1 + 106739 0.66 0.809947
Target:  5'- aGCAGgUgCGaGAgCCCGCCGCgcaccggcgGCCa -3'
miRNA:   3'- aUGUCgAgGUaCU-GGGCGGCGaa-------CGG- -5'
23567 3' -57.7 NC_005261.1 + 133395 0.66 0.809947
Target:  5'- cUGCGGCgcg--GACgCCGCCGCcUGCg -3'
miRNA:   3'- -AUGUCGagguaCUG-GGCGGCGaACGg -5'
23567 3' -57.7 NC_005261.1 + 77980 0.66 0.809947
Target:  5'- cACGGCcgCCGcu-CCCGCCGCggcggaggcgGCCc -3'
miRNA:   3'- aUGUCGa-GGUacuGGGCGGCGaa--------CGG- -5'
23567 3' -57.7 NC_005261.1 + 48002 0.66 0.809947
Target:  5'- gACGGCgcgCCc--GCCCGCCGCgcgaggGCg -3'
miRNA:   3'- aUGUCGa--GGuacUGGGCGGCGaa----CGg -5'
23567 3' -57.7 NC_005261.1 + 121565 0.66 0.809947
Target:  5'- cACGGaCUUCAUGcuCUCGCUGCcaGCCg -3'
miRNA:   3'- aUGUC-GAGGUACu-GGGCGGCGaaCGG- -5'
23567 3' -57.7 NC_005261.1 + 34587 0.66 0.809947
Target:  5'- --aGGCUagCAUGGCCCGCUucgagGCgaugGCCg -3'
miRNA:   3'- augUCGAg-GUACUGGGCGG-----CGaa--CGG- -5'
23567 3' -57.7 NC_005261.1 + 123038 0.66 0.809947
Target:  5'- gGCAGCaggcaccccuUCUcUG-CCCGCCGCUcgaugagGCCc -3'
miRNA:   3'- aUGUCG----------AGGuACuGGGCGGCGAa------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.