miRNA display CGI


Results 121 - 140 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 134839 0.66 0.436809
Target:  5'- -cGGCggaagUGCCgGCGcGGCUgGCGGCCGCGc -3'
miRNA:   3'- gcCCGa----GCGG-UGC-CCGG-CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 132690 0.66 0.436809
Target:  5'- uGGGCUU-CCGCGuGGCCGUGcCCGUc -3'
miRNA:   3'- gCCCGAGcGGUGC-CCGGCGUcGGCGu -5'
23567 5' -66.4 NC_005261.1 + 59085 0.66 0.411798
Target:  5'- gCGGGUgCGCCGCGcccucgcGCuCGCAGgCGCGc -3'
miRNA:   3'- -GCCCGaGCGGUGCc------CG-GCGUCgGCGU- -5'
23567 5' -66.4 NC_005261.1 + 17134 0.66 0.411798
Target:  5'- gCGGGUaCGCCgGCGGGUcgaCGUAGaCCGUc -3'
miRNA:   3'- -GCCCGaGCGG-UGCCCG---GCGUC-GGCGu -5'
23567 5' -66.4 NC_005261.1 + 61795 0.66 0.403659
Target:  5'- uCGGGCgcgucCGCCAUGGcGCCgGCGcucuGCaCGCGc -3'
miRNA:   3'- -GCCCGa----GCGGUGCC-CGG-CGU----CG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 124890 0.66 0.420037
Target:  5'- cCGGGUUCcugGCCGCccccGCCGCcacgcgggaAGCCGCGg -3'
miRNA:   3'- -GCCCGAG---CGGUGcc--CGGCG---------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 93493 0.66 0.420037
Target:  5'- cCGcGGCgaagCGCgcgaacCGCGGcGCCGUguuGGCCGCGa -3'
miRNA:   3'- -GC-CCGa---GCG------GUGCC-CGGCG---UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 83039 0.66 0.436809
Target:  5'- aGGGCcgcUCGCCGCGGGagggggcuccCUGCGcgcccCCGCGg -3'
miRNA:   3'- gCCCG---AGCGGUGCCC----------GGCGUc----GGCGU- -5'
23567 5' -66.4 NC_005261.1 + 114991 0.66 0.420037
Target:  5'- gCGGGCcggcCGCCGC-GGCCcCGGCCccGCGg -3'
miRNA:   3'- -GCCCGa---GCGGUGcCCGGcGUCGG--CGU- -5'
23567 5' -66.4 NC_005261.1 + 46156 0.66 0.411798
Target:  5'- gCGcGGCacugcgccccagUCGCCgAUGGG-CGCAGUCGCGc -3'
miRNA:   3'- -GC-CCG------------AGCGG-UGCCCgGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 2891 0.66 0.436809
Target:  5'- gGGGCgaacCGCUcCGGGCCaaaguccaGCAcgGCCGCc -3'
miRNA:   3'- gCCCGa---GCGGuGCCCGG--------CGU--CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 88149 0.66 0.420037
Target:  5'- gCGGGggCGCCcCGGcCgCGCAGCCGg- -3'
miRNA:   3'- -GCCCgaGCGGuGCCcG-GCGUCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 78215 0.66 0.436809
Target:  5'- cCGuGGCUggccUGCCGCucGCUcaGCAGCCGCAg -3'
miRNA:   3'- -GC-CCGA----GCGGUGccCGG--CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 18648 0.66 0.411798
Target:  5'- gGGGCg-GCCACGGucucgcGCuCGCAG-CGCAu -3'
miRNA:   3'- gCCCGagCGGUGCC------CG-GCGUCgGCGU- -5'
23567 5' -66.4 NC_005261.1 + 15968 0.66 0.411798
Target:  5'- gCGGGCgggggaggGCC-CGGGCCGCucacccgggcAGCgCGCu -3'
miRNA:   3'- -GCCCGag------CGGuGCCCGGCG----------UCG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 93617 0.66 0.411798
Target:  5'- cCGGG-UCGCgACGccGGCCaGCAGCaGCAg -3'
miRNA:   3'- -GCCCgAGCGgUGC--CCGG-CGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 110298 0.66 0.419208
Target:  5'- gCGGGCgccugCGCCgccgaguACGGcaaCCGCGccGCCGCGg -3'
miRNA:   3'- -GCCCGa----GCGG-------UGCCc--GGCGU--CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 100043 0.66 0.403659
Target:  5'- gCGGGCgucaGCUcgaGCGcGCCGCcGCCGCc -3'
miRNA:   3'- -GCCCGag--CGG---UGCcCGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 70366 0.66 0.403659
Target:  5'- gGcGGCgCGCCuccACGGcGCCGCuGGCCGaCAc -3'
miRNA:   3'- gC-CCGaGCGG---UGCC-CGGCG-UCGGC-GU- -5'
23567 5' -66.4 NC_005261.1 + 109613 0.66 0.436809
Target:  5'- cCGcGCUCGCCAgCGcuauaaaggcGGCuUGCGGCCGCc -3'
miRNA:   3'- -GCcCGAGCGGU-GC----------CCG-GCGUCGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.