miRNA display CGI


Results 141 - 160 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 36394 0.66 0.403659
Target:  5'- gCGGGCgCGCgGCGGaGau-CAGCCGCGc -3'
miRNA:   3'- -GCCCGaGCGgUGCC-CggcGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 91970 0.66 0.403659
Target:  5'- cCGGGgaCacgGUCGC-GGCCGCcGCCGCGg -3'
miRNA:   3'- -GCCCgaG---CGGUGcCCGGCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 78767 0.66 0.403659
Target:  5'- cCGGcGCU-GCCcccCGacGCCGCGGCCGCGc -3'
miRNA:   3'- -GCC-CGAgCGGu--GCc-CGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 71912 0.66 0.394826
Target:  5'- uGGGCUgcacggcCGCCuCGguGGCCGU-GCCGCGc -3'
miRNA:   3'- gCCCGA-------GCGGuGC--CCGGCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 18648 0.66 0.411798
Target:  5'- gGGGCg-GCCACGGucucgcGCuCGCAG-CGCAu -3'
miRNA:   3'- gCCCGagCGGUGCC------CG-GCGUCgGCGU- -5'
23567 5' -66.4 NC_005261.1 + 135798 0.66 0.411798
Target:  5'- aGGcGCUgGCCgagaucGCGGcCCGCcGCCGCGc -3'
miRNA:   3'- gCC-CGAgCGG------UGCCcGGCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 106299 0.67 0.364534
Target:  5'- -uGGC--GCCGCGGcagaGCCGCAGCgGCGg -3'
miRNA:   3'- gcCCGagCGGUGCC----CGGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 99697 0.67 0.364534
Target:  5'- cCGGcGCUgUGCC-CGGcGCgCGCAGCCaGCGc -3'
miRNA:   3'- -GCC-CGA-GCGGuGCC-CG-GCGUCGG-CGU- -5'
23567 5' -66.4 NC_005261.1 + 64414 0.67 0.364534
Target:  5'- cCGGGCUaGgCGCGGG-CGCGGCUucuGCGc -3'
miRNA:   3'- -GCCCGAgCgGUGCCCgGCGUCGG---CGU- -5'
23567 5' -66.4 NC_005261.1 + 136386 0.67 0.387692
Target:  5'- uCGGGCccggCGCCuucGCGcGcGCCGaGGCCGCu -3'
miRNA:   3'- -GCCCGa---GCGG---UGC-C-CGGCgUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 60065 0.67 0.387692
Target:  5'- cCGGGCUCcUCAgGuGGCCcgccgGCAGCgGCGg -3'
miRNA:   3'- -GCCCGAGcGGUgC-CCGG-----CGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 137587 0.67 0.387692
Target:  5'- cCGGGgaCGCgGCGcuGGCgGCcGCCGCc -3'
miRNA:   3'- -GCCCgaGCGgUGC--CCGgCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 22043 0.67 0.387692
Target:  5'- uGcGGCgacgCGCCcagcggcguCGGGgaCGCGGCCGCGa -3'
miRNA:   3'- gC-CCGa---GCGGu--------GCCCg-GCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 68597 0.67 0.367565
Target:  5'- aGGGCgcgcagguagcgcaCGCCGugcCGGGCgGCGGgCGCGc -3'
miRNA:   3'- gCCCGa-------------GCGGU---GCCCGgCGUCgGCGU- -5'
23567 5' -66.4 NC_005261.1 + 107532 0.67 0.364534
Target:  5'- gGGGCUC-CCGCGGGCCuCc-CCGUc -3'
miRNA:   3'- gCCCGAGcGGUGCCCGGcGucGGCGu -5'
23567 5' -66.4 NC_005261.1 + 51330 0.67 0.390852
Target:  5'- gCGGGUccgCGCCGCGcgcggaccagggcgcGGCCaaGGCCGCc -3'
miRNA:   3'- -GCCCGa--GCGGUGC---------------CCGGcgUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 86291 0.67 0.341626
Target:  5'- -cGGUggCGCCgGCGacgagcgggaccaGGCCGCGGCCGCu -3'
miRNA:   3'- gcCCGa-GCGG-UGC-------------CCGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 91649 0.67 0.364534
Target:  5'- gGGGCcgUGUCGCGcgaGGCCGC-GCuCGCAg -3'
miRNA:   3'- gCCCGa-GCGGUGC---CCGGCGuCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 134708 0.67 0.387692
Target:  5'- cCGaGGCggcCGCCGCGcuGGa-GCGGCCGCGc -3'
miRNA:   3'- -GC-CCGa--GCGGUGC--CCggCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 116355 0.67 0.364534
Target:  5'- gGGGC-C-CCGCGGGCgCGCGuUCGCGa -3'
miRNA:   3'- gCCCGaGcGGUGCCCG-GCGUcGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.