miRNA display CGI


Results 161 - 180 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 63482 0.67 0.349634
Target:  5'- uGGcGCgcugccgCGCCAgcagguugucCGcGGCCGCuGCCGCGg -3'
miRNA:   3'- gCC-CGa------GCGGU----------GC-CCGGCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 434 0.67 0.349634
Target:  5'- gGGGCggCGCCggcGCGGGCgGCGGggcCCGgGg -3'
miRNA:   3'- gCCCGa-GCGG---UGCCCGgCGUC---GGCgU- -5'
23567 5' -66.4 NC_005261.1 + 109928 0.67 0.347437
Target:  5'- gCGGGCgccgCGaacgaaggagacgaCCGC-GGCCGCGGCgGCGg -3'
miRNA:   3'- -GCCCGa---GC--------------GGUGcCCGGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 94005 0.67 0.347437
Target:  5'- uGGGCg-GCCAgcagcgcgcgcuccCGGGCCGCcugcAGCuCGCGc -3'
miRNA:   3'- gCCCGagCGGU--------------GCCCGGCG----UCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 108093 0.67 0.346707
Target:  5'- aGGcGCgcgcgcuccaccgCGUCGCGGGCCGC-GCCaaGCAg -3'
miRNA:   3'- gCC-CGa------------GCGGUGCCCGGCGuCGG--CGU- -5'
23567 5' -66.4 NC_005261.1 + 103283 0.67 0.342349
Target:  5'- -aGGC-CGCCGggccCGGGUCGCgccGGCCGCc -3'
miRNA:   3'- gcCCGaGCGGU----GCCCGGCG---UCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 93963 0.67 0.342349
Target:  5'- gCGGGCccCGCCcccccGCGcGCCGCggcgucGGCCGCGc -3'
miRNA:   3'- -GCCCGa-GCGG-----UGCcCGGCG------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 91244 0.67 0.342349
Target:  5'- gCGcGGCgcgCGCUgccgGCGGGCgGCGGCaGCGg -3'
miRNA:   3'- -GC-CCGa--GCGG----UGCCCGgCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 69511 0.67 0.342349
Target:  5'- cCGGcGCcCGCCGCgugaGGGCCGgC-GCCGCc -3'
miRNA:   3'- -GCC-CGaGCGGUG----CCCGGC-GuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 9389 0.67 0.342349
Target:  5'- gGGGCacCGUgGCGGccaGCCGCgcgagcgucAGCCGCAg -3'
miRNA:   3'- gCCCGa-GCGgUGCC---CGGCG---------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 6808 0.67 0.342349
Target:  5'- gGGGCgccggCGCCGCu-GCCgGCAGCgGCGg -3'
miRNA:   3'- gCCCGa----GCGGUGccCGG-CGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 100341 0.67 0.349634
Target:  5'- aGGGCaUgGCCAgcuCGGGCUcCAGCaCGCGc -3'
miRNA:   3'- gCCCG-AgCGGU---GCCCGGcGUCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 86291 0.67 0.341626
Target:  5'- -cGGUggCGCCgGCGacgagcgggaccaGGCCGCGGCCGCu -3'
miRNA:   3'- gcCCGa-GCGG-UGC-------------CCGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 51938 0.67 0.342349
Target:  5'- aGGGCgacgUGCCcuGCGGGCUGU-GCuCGCGc -3'
miRNA:   3'- gCCCGa---GCGG--UGCCCGGCGuCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 66382 0.67 0.342349
Target:  5'- gCGGcGCgagCGCCACGuGGCgGacuucGCCGCGg -3'
miRNA:   3'- -GCC-CGa--GCGGUGC-CCGgCgu---CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 93486 0.67 0.342349
Target:  5'- cCGGG-UCGCgCGCagcucgGGGCC-CAGCUGCAg -3'
miRNA:   3'- -GCCCgAGCG-GUG------CCCGGcGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 99530 0.67 0.342349
Target:  5'- gCGGGcCUgGCCGgcuUGGGCC-CGGCCaGCGc -3'
miRNA:   3'- -GCCC-GAgCGGU---GCCCGGcGUCGG-CGU- -5'
23567 5' -66.4 NC_005261.1 + 105129 0.67 0.342349
Target:  5'- aGGGCgagUGCCcgacgcaggggAUGuGGCgGCGGCCGCc -3'
miRNA:   3'- gCCCGa--GCGG-----------UGC-CCGgCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 4188 0.67 0.342349
Target:  5'- aCGGGC-CGUgGCcGGCCaUGGCCGCGa -3'
miRNA:   3'- -GCCCGaGCGgUGcCCGGcGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 54893 0.67 0.342349
Target:  5'- gCGGGCcacggUgGCgGCGGGCgGCGuggcGCCGCc -3'
miRNA:   3'- -GCCCG-----AgCGgUGCCCGgCGU----CGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.