miRNA display CGI


Results 121 - 140 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 98186 0.74 0.126844
Target:  5'- aCGGGCccgUCGCCACGcuGGUCGCGGUCGa- -3'
miRNA:   3'- -GCCCG---AGCGGUGC--CCGGCGUCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 93363 0.74 0.129037
Target:  5'- gCGGcGCUCGCgGCGgcgcucuuccucgcGGCUGCGGCUGCGg -3'
miRNA:   3'- -GCC-CGAGCGgUGC--------------CCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 90603 0.73 0.143287
Target:  5'- gCGGuGCgCGCgGC-GGCCGCGGCCGCc -3'
miRNA:   3'- -GCC-CGaGCGgUGcCCGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 133568 0.73 0.13985
Target:  5'- gGGGC-CGCCGCc-GCCGCGGCCGaCAc -3'
miRNA:   3'- gCCCGaGCGGUGccCGGCGUCGGC-GU- -5'
23567 5' -66.4 NC_005261.1 + 32990 0.73 0.143287
Target:  5'- gCGGauGC-CGCCGCagaucacGGCCGCGGCCGCGg -3'
miRNA:   3'- -GCC--CGaGCGGUGc------CCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 19998 0.73 0.143287
Target:  5'- aCGGcGUagGCCGC-GGCCGCGGCCGUc -3'
miRNA:   3'- -GCC-CGagCGGUGcCCGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 107948 0.73 0.143287
Target:  5'- gCGGGCcagCGUCcaggcgggcgcGCGGGCCGCcgcGCCGCGc -3'
miRNA:   3'- -GCCCGa--GCGG-----------UGCCCGGCGu--CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 49144 0.73 0.143287
Target:  5'- --aGCgCGCC-CGGGCCGCAGCCGg- -3'
miRNA:   3'- gccCGaGCGGuGCCCGGCGUCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 232 0.73 0.146802
Target:  5'- gCGGGCccCGCgaGCGGGCC-CGGCUGCGg -3'
miRNA:   3'- -GCCCGa-GCGg-UGCCCGGcGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 59405 0.73 0.159346
Target:  5'- cCGGGCUCGCCggcgccggcgcugucGCGcGGCCcgGCAGgCGCc -3'
miRNA:   3'- -GCCCGAGCGG---------------UGC-CCGG--CGUCgGCGu -5'
23567 5' -66.4 NC_005261.1 + 32148 0.73 0.157822
Target:  5'- gGGGCUCGgCGCGccGCUGCGGCCGg- -3'
miRNA:   3'- gCCCGAGCgGUGCc-CGGCGUCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 31674 0.73 0.157822
Target:  5'- uGcGGCUgGCCGCGGcGCgGCGGCgGCu -3'
miRNA:   3'- gC-CCGAgCGGUGCC-CGgCGUCGgCGu -5'
23567 5' -66.4 NC_005261.1 + 129681 0.73 0.157822
Target:  5'- gGGGCgUCGCgAcuCGGGCCGgGGCCGgGg -3'
miRNA:   3'- gCCCG-AGCGgU--GCCCGGCgUCGGCgU- -5'
23567 5' -66.4 NC_005261.1 + 73580 0.73 0.154068
Target:  5'- aCGGGCcccccCGCgGCGgaGGCgGCGGCCGCGa -3'
miRNA:   3'- -GCCCGa----GCGgUGC--CCGgCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 59709 0.73 0.150395
Target:  5'- cCGGGCagaccCGCCcgcCGGGCgGCAGCgGCGg -3'
miRNA:   3'- -GCCCGa----GCGGu--GCCCGgCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 108734 0.73 0.150395
Target:  5'- gCGGGCcagcggcggCGCCGCGGcGuCCGCGGCgCGCc -3'
miRNA:   3'- -GCCCGa--------GCGGUGCC-C-GGCGUCG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 100077 0.73 0.150395
Target:  5'- gGGGCgCGCCGCGccccucGCCGCcGCCGCu -3'
miRNA:   3'- gCCCGaGCGGUGCc-----CGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 106255 0.73 0.146802
Target:  5'- cCGGGC-CGCCGCc-GCCGCuGCCGCc -3'
miRNA:   3'- -GCCCGaGCGGUGccCGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 137915 0.73 0.146802
Target:  5'- gCGGGCccCGCgaGCGGGCC-CGGCUGCGg -3'
miRNA:   3'- -GCCCGa-GCGg-UGCCCGGcGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 131919 0.73 0.146802
Target:  5'- aCGGGCUuuuuggCGCgCGCGGGaCCGCGGugcCCGCGc -3'
miRNA:   3'- -GCCCGA------GCG-GUGCCC-GGCGUC---GGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.