Results 141 - 160 of 919 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23567 | 5' | -66.4 | NC_005261.1 | + | 32000 | 0.73 | 0.157822 |
Target: 5'- aGGGCgcggcggccgCGCCAgGcGGCCGCGGgCGCu -3' miRNA: 3'- gCCCGa---------GCGGUgC-CCGGCGUCgGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 38160 | 0.73 | 0.157822 |
Target: 5'- gGGGCgcggcgCGCCccCGGGCgGCGGCgGCGc -3' miRNA: 3'- gCCCGa-----GCGGu-GCCCGgCGUCGgCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 48111 | 0.73 | 0.157822 |
Target: 5'- uCGccCUCGCCGCGGGCCGCgucggcccAGCCgGCGa -3' miRNA: 3'- -GCccGAGCGGUGCCCGGCG--------UCGG-CGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 58937 | 0.73 | 0.157822 |
Target: 5'- gCGGGCUCGCCAacuucuuccaGGGCCuggGC-GCCGUc -3' miRNA: 3'- -GCCCGAGCGGUg---------CCCGG---CGuCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 136666 | 0.73 | 0.157822 |
Target: 5'- gGGGCUCGgCGCGccGCUGCGGCCGg- -3' miRNA: 3'- gCCCGAGCgGUGCc-CGGCGUCGGCgu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 105914 | 0.73 | 0.136488 |
Target: 5'- cCGGGC--GCCGC-GGCCGCGGCgGCGg -3' miRNA: 3'- -GCCCGagCGGUGcCCGGCGUCGgCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 60758 | 0.73 | 0.157822 |
Target: 5'- gGGGCggGCggggGCGcGGCUGCAGCCGCGc -3' miRNA: 3'- gCCCGagCGg---UGC-CCGGCGUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 18699 | 0.73 | 0.146802 |
Target: 5'- gGGGCcuugcUCgGCCGCGGGgaCCGgGGCCGCGu -3' miRNA: 3'- gCCCG-----AG-CGGUGCCC--GGCgUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 83679 | 0.73 | 0.136488 |
Target: 5'- uGGGCgcgcagcgCGCCgccgagGCGGcGCCGCAGCCaGCGc -3' miRNA: 3'- gCCCGa-------GCGG------UGCC-CGGCGUCGG-CGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 1397 | 0.73 | 0.136488 |
Target: 5'- cCGGGC--GCCGC-GGCCGCGGCgGCGg -3' miRNA: 3'- -GCCCGagCGGUGcCCGGCGUCGgCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 29050 | 0.73 | 0.13985 |
Target: 5'- gGGGC-CGCCGCc-GCCGCGGCCGaCAc -3' miRNA: 3'- gCCCGaGCGGUGccCGGCGUCGGC-GU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 97015 | 0.73 | 0.13985 |
Target: 5'- uGGGCggGCCGuCGGGCgCGCccGGCCGCc -3' miRNA: 3'- gCCCGagCGGU-GCCCG-GCG--UCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 81471 | 0.73 | 0.143287 |
Target: 5'- aGGGCccaCGCCGCccagagcaGGGCCGCGGCUaGCGc -3' miRNA: 3'- gCCCGa--GCGGUG--------CCCGGCGUCGG-CGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 3431 | 0.73 | 0.143287 |
Target: 5'- gCGGGCcagCGUCcaggcgggcgcGCGGGCCGCcgcGCCGCGc -3' miRNA: 3'- -GCCCGa--GCGG-----------UGCCCGGCGu--CGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 71425 | 0.73 | 0.143287 |
Target: 5'- gGGGCcCgGCC-CGGGcCCGCGGCgCGCAg -3' miRNA: 3'- gCCCGaG-CGGuGCCC-GGCGUCG-GCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 64117 | 0.73 | 0.143287 |
Target: 5'- aCGGGCggcacgUGCCGCGcGGCCGCcAGCgCGUc -3' miRNA: 3'- -GCCCGa-----GCGGUGC-CCGGCG-UCG-GCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 232 | 0.73 | 0.146802 |
Target: 5'- gCGGGCccCGCgaGCGGGCC-CGGCUGCGg -3' miRNA: 3'- -GCCCGa-GCGg-UGCCCGGcGUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 131919 | 0.73 | 0.146802 |
Target: 5'- aCGGGCUuuuuggCGCgCGCGGGaCCGCGGugcCCGCGc -3' miRNA: 3'- -GCCCGA------GCG-GUGCCC-GGCGUC---GGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 137915 | 0.73 | 0.146802 |
Target: 5'- gCGGGCccCGCgaGCGGGCC-CGGCUGCGg -3' miRNA: 3'- -GCCCGa-GCGg-UGCCCGGcGUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 106255 | 0.73 | 0.146802 |
Target: 5'- cCGGGC-CGCCGCc-GCCGCuGCCGCc -3' miRNA: 3'- -GCCCGaGCGGUGccCGGCGuCGGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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